BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929420

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16070.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   715    0.0  


> AT3G16070.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G15260.1); 
Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5451864-5452316 
REVERSE LENGTH=453
Length=453

 Score =  715 bits (387),  Expect = 0.0
 Identities = 433/455 (95%), Gaps = 4/455 (1%)
 Strand=Plus/Plus

Query  22   ATGTTTCAGAAAACAAACAGTTTCTTTCATAGAACAGTTAACAGTCTCAAGTCCATCATT  81
            |||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct  1    ATGTTTCAGAAAACAAACAGTTTCTTTCATAGAACACTTCACAGTCTCAAGTCCATTATT  60

Query  82   CTCCGAACAGGTAAGAAACTTCCTAGACCAAAAACTCACTTCTCCTGCACATTTTGCAGA  141
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCCGAGCAGGTAAGAAACTTCCTAGACCAAAAACTCACTTCTCCTGCACATTTTGCAGA  120

Query  142  TCAAATTCTCTCCATGCCGACAATATCTACGCAAGTTTCCTCAACATCTGGGAGTCTGAT  201
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCAAATTCTCTCGATGGCGACAATATCTACGCAAGTTTCCTCAACATCTGGGAGTCTGAT  180

Query  202  CTCA-AAAACAGCATTGGAGGTCCATTAAAGCTGGAGCAGATGGTTCAAGAGCAAGAACA  260
            || | |||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||
Sbjct  181  CT-AGAAAACAGCATTGAAGGTCCATTAAAGTTGGAGCACAAGGTTCAAGAGCAAGAACA  239

Query  261  ATA-CTATCAAGTGAAGAAAACAGAAGCTTGCTCTTCGCATTCATCAAGAGACTGCGATA  319
            ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  240  ATATC-ATCAAGTGAAGAAAACAGAAGCTTGCTCTTCGTATTCATCAAGAGACTGCGATA  298

Query  320  CAATGGAGAAGAAGATTAACGAGATGTTTATGACTGAGACAGGAGATATAGAGCAAGCCC  379
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  299  CAATGGAGAAGAAGATTAACGAGATGTATATGACTGAGACAGTAGATATAGAGCAAGCCC  358

Query  380  TTGACGTTGAAGAGGCACTTCATTACTATTCTCGTATTAGAAGTCCCGTGTATCTCAACA  439
            |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  359  TTGACGTTGAAGAGGCACTTCACTACTATTCTCGTATTAGCAGTCCCGTGTATCTCAACA  418

Query  440  TCGTTGACAAGTTCTTCACTGATCTCTACTCTTGA  474
            | ||||||||||||||||| |||||||||||||||
Sbjct  419  TTGTTGACAAGTTCTTCACGGATCTCTACTCTTGA  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5