BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929421
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16080.1 | Symbols: | Zinc-binding ribosomal protein family... 549 6e-156
AT1G52300.1 | Symbols: | Zinc-binding ribosomal protein family... 348 2e-95
> AT3G16080.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr3:5454818-5455927 FORWARD LENGTH=612
Length=612
Score = 549 bits (297), Expect = 6e-156
Identities = 332/349 (95%), Gaps = 1/349 (0%)
Strand=Plus/Plus
Query 1 AAGCCGTATCCTAGGGTTTTC-TTGCACGCAATTCGCTCCAATGGGAAAGGGAACAGGAA 59
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||| |
Sbjct 34 AAGCCGTATCCTAGGGTTTTCTTTGCACACTACTCGCTCCAATGGGAAAGGGAACAGGGA 93
Query 60 GTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 GTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTT 153
Query 120 TCCACATCCAGAAGAGTCGTTGCTCTGCTTGCGCTTACCCTGCCGCTCGCAAGAGGACTT 179
||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct 154 TCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTT 213
Query 180 ACAACTGGAGTGAGAAGGCCATCAGGAGGAAGACTACCGGTACCGGAAGGATGAGGTATC 239
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 214 ACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATC 273
Query 240 TCCGTAATGTTCCCCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAA 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAA 333
Query 300 GAAACAAGGCAGCAGCTTCATCAGCTTAAAGAACCAGTTCGAGTAATCT 348
| | ||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 334 GGAGCAAGGCATCAGCTTCATCAGCTTAAAGAGCCAGTTCGAGTAGTCT 382
> AT1G52300.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr1:19474898-19476234 REVERSE LENGTH=685
Length=685
Score = 348 bits (188), Expect = 2e-95
Identities = 267/305 (88%), Gaps = 5/305 (2%)
Strand=Plus/Plus
Query 27 CGCAATTCGCTCCAATGGGAAAGGGAACAGGAAGTTTCGGTAAGAGGAGGAACAAGAGTC 86
||| || |||| ||||| |||||||| ||||||||||| ||||| || ||||||||||
Sbjct 70 CGC-ATCCGCTTCAATGACTAAGGGAACGGGAAGTTTCGGAAAGAGAAGAAACAAGAGTC 128
Query 87 ACACACTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCTG 146
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 129 ACACACTCTGTGTCAGATGTGGCCGTCGCAGTTTCCACATCCAGAAGAGTCGTTGCTCTG 188
Query 147 CTTGCGCTTA-CCCTGCCGCTCGCAAGAGGACTTACAACTGGAGTGAGAAGGCCATCAGG 205
|||| ||||| ||| ||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 189 CTTGTGCTTATCCC-GCCGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCAATCCGT 247
Query 206 AGGAAGACTACCGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCCCGTC-GGTTCAA 264
|| |||||||| || || ||||||||||||||||| || ||||| || || | |||||||
Sbjct 248 AGAAAGACTACTGGAACTGGAAGGATGAGGTATCTTCGCAATGTGCCTCG-CAGGTTCAA 306
Query 265 GACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAAGAAACAAGGCAGCAGCTTCATCAGC 324
||| || |||||||| ||||| |||||||||||||| ||||||| || |||||||||||
Sbjct 307 GACCGGTTTCAGAGAGGGTACCGAAGCCAAGCCAAGGAACAAGGGAGTTGCTTCATCAGC 366
Query 325 TTAAA 329
|||||
Sbjct 367 TTAAA 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16286750676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5