BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929422
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16090.1 | Symbols: | RING/U-box superfamily protein | chr3... 2108 0.0
> AT3G16090.1 | Symbols: | RING/U-box superfamily protein | chr3:5456144-5458966
FORWARD LENGTH=2120
Length=2120
Score = 2108 bits (1141), Expect = 0.0
Identities = 1250/1304 (96%), Gaps = 2/1304 (0%)
Strand=Plus/Plus
Query 2 GAAGACGAAGAAGAAGACAATGATTCGACTAAGAACATACGCAAGCCTTAGTTTTATGGC 61
||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 351 GAAGAAGAAGAAGAAGACGATGATTCGACTAAGAACATACGCAGGCCTTAGTTTTATGGC 410
Query 62 GACTTTGGCTGTAATCTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGT 121
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AACTTTGGCTGTAATTTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGT 470
Query 122 TTATTTATCAACCTCAAAGATCAGTTTGGTGCTGCTTCTCAATATGTGTTTGGTTCTTAT 181
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 471 TTATCTATCAACCTCAAAGATCAGTTTGGTGTTGCTTCTCAATATGTGTTTGGTTCTTAT 530
Query 182 GCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGT 590
Query 242 CGAGAGGTTGAATGAACAAGCTTGGAGAGAAGTCATGGAGATTCTTTTTGCCATTACTAT 301
||||||| | ||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 591 CGAGAGGCTAAATGAACAAGCTTGGAGAGAACTTATGGAGATTCTCTTTGCCATTACTAT 650
Query 302 CTTTAGACAAGACTTCTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAA 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CTTTAGACAAGACTTTTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAA 710
Query 362 GGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTGTC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 711 GGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTCTC 770
Query 422 TAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTT 830
Query 482 GTTTATGTACAGTTCTATACGTCACTTGATTCAGTCGCGCCAGGCTTCGGTTTCTCTCTT 541
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 831 ATTTATGTACAGTTCTATACGCCACTTGATTCAGTCGCGTCAGGCTTCGGTTTCTCTCTT 890
Query 542 CTTCTCATTCGAGTATATGATACTGGCGACGACGACTGTTGCTATCTTTGTGAAGTACGT 601
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 891 CTTCTCATTCGAGTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGT 950
Query 602 TTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAACCAGTTTATACTTT 661
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 951 TTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAGCCAGTTTATACTTT 1010
Query 662 CTATCTGGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGT 721
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CTATCTTGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGT 1070
Query 722 CATATTCATGAACTATGGTGTGCCTTTACACTTGTTACGGGAGCTCTACGAGACCTTCAG 781
|||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1071 CATATTCATGAACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAG 1130
Query 782 GAACTTCCAAATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAA 841
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AAACTTCCAGATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAA 1190
Query 842 CGATAGGTTTCCTGATGCAACTCCCGAAGAACTTACTGCAAGTGATGCCACATGTATCAT 901
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1191 CGACAGGTTTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCAT 1250
Query 902 ATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCA 1310
Query 962 TTGTCTTCGATCATGGTTGGAGCGACAGCAGACGTGTCCTACTTGTAGAGCACTTGTTGT 1021
|||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1311 TTGTCTACGATCATGGTTGGAGAGACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGT 1370
Query 1022 ACCTCCTGAGAATGCCACATCTGCAGCTGCAGGCCAACGTGGATTATACCAAGGTTCCCA 1081
|||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1371 ACCTCCTGAGAATGCCACCTCTGCAGCTCCAGGCCAACGTGAATTACACCAAGGTTCCCA 1430
Query 1082 ACAGGGTACATCAAGCTCAAATAACCAGGGCTCTGAAACAAGTTCTGCTGCTGGCGTTTC 1141
||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||
Sbjct 1431 ACAGGGTACATCAAGCTCAGGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTGGCGTTTC 1490
Query 1142 CAATGATAATTTGAGCAGGCACCACGCCAGACTTCAAGCAGCTGCTTCTGCAGCCTCCAT 1201
|||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1491 CAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAGCCTCCGT 1550
Query 1202 GTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGCCGAGTA-TTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 1551 GTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGTCGGG-AGTTC 1609
Query 1261 CTGGGACAGAGCAAGTGTCAACTGAACCACATCAAACTCGTCCT 1304
|||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 1610 CTGGAACAGAGCAAGTGTCAACTGAACCAGATCAAACTCTTCCT 1653
Score = 268 bits (145), Expect = 9e-71
Identities = 179/196 (91%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1326 CTTCCTCAACACAACCTTCCAGGTGAAAACCCTCAAGCCTATGCAAATATGTCGGAGACT 1385
|||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||
Sbjct 1648 CTTCCTCAACACAACCTTCCTGTTGAAAACTCTCATGCCTATGCAAATATGTCGGAGACT 1707
Query 1386 AAGCTGGAAGAAATGAGAAAATCTCTCGAGACCCACCTGGAGATTTTGCGAAACCGGCTT 1445
||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 1708 AAGCTAGAAGAAATGAGAAAATCTCTGGAAACCCACCTCGAGATTTTGCGAAACCGACTT 1767
Query 1446 CATTTTCTGGAGAAGAGGAAACCAGAGTCCACAGGAGAAGCAGATAACAAAGGAAAGTCG 1505
|| |||||||||| |||||||||||| ||| |||| ||| |||| |||||||||||||||
Sbjct 1768 CACTTTCTGGAGACGAGGAAACCAGAATCCGCAGGGGAACCAGAGAACAAAGGAAAGTCG 1827
Query 1506 GTTGCGGATGCAGCAG 1521
||||| ||||||||||
Sbjct 1828 GTTGCTGATGCAGCAG 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5