BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929436
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 252 6e-66
AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 231 7e-60
AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 176 3e-43
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 150 2e-35
AT1G61542.1 | Symbols: | pseudogenen of kelch repeat-containin... 87.9 2e-16
AT1G61550.1 | Symbols: | S-locus lectin protein kinase family ... 87.9 2e-16
> AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:1043621-1044992 REVERSE LENGTH=1280
Length=1280
Score = 252 bits (136), Expect = 6e-66
Identities = 531/712 (75%), Gaps = 65/712 (9%)
Strand=Plus/Plus
Query 161 CTCCTCGAGCGTCTCTGTTCTGGATTGCCGGTCTCACACGTGGCGCGAGGCTCCAAGCTT 220
||| || |||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 443 CTCTTCAAGCGTCTCCATTCTTGATTGTCGGTCTCACACGTGGCGCGAGGCTCCAAGCTT 502
Query 221 GCCGGTGAAG--CTAAT-TTCACTCTCTGCTAGCGTCTTTGATAGAAAGATATATGTCGC 277
|| | ||| | ||| | ||| | ||| |||| ||| ||||| |||||||||| || ||
Sbjct 503 GC-G-TGAGGGGCTA-TGTTCTGTTTCTTCTAGTGTCCTTGATCGAAAGATATACGTAGC 559
Query 278 AGGG-GCCGCAGGGC-GGTACAACGATGTCCGTTCCGATAATTTGAAGACCTCGTTGGAA 335
||| | || || ||| ||| || || | | | | |||| ||||| ||
Sbjct 560 AGGAAGTTGCTTGGATGGT-----GAT-TC--TTAC-ACC-TAT-AAGAATTCGTTCGAG 608
Query 336 GTGTTCGACACAAAAACACAAACTTGGGATCCTGAGCCCATCCCTTGCAGTGAGATAAAA 395
||||| ||||| |||||||| |||||||||||| |||| ||||||| ||| ||
Sbjct 609 GTGTTTGACACTGAAACACAATTTTGGGATCCTGATACCATTACTTGCAGCAAGACGGAA 668
Query 396 GAC-AGCTTTA---ATTGCAGAAGCATATGGATTGACGGAAAGTTCCATGTGG--C--G- 446
| | | |||| || || ||| | ||| ||||||||| |||||||||||| | |
Sbjct 669 GGCGATTTTTACGGAT-GCGGAACCGCATGCATTGACGGAGAGTTCCATGTGGTGCCTGT 727
Query 447 AC-TCACAAA-GATTTGT--TTGCTTACAAATCCAAGGAAGGTAGATGGGACACGGTTGA 502
| ||| ||| || | |||||||||| |||||||||||||||||||||| |||||
Sbjct 728 AGGTCAAAAAAGAGAGGCGGTTGCTTACAATTCCAAGGAAGGTAGATGGGACATGGTTGG 787
Query 503 ACCACGACAGGCGATGCATCATTATTTGTATTCAGATTCTTATTGCAAGATAGACAATGT 562
||| ||| ||| |||||||| || ||||| ||||| || ||||| | |||||
Sbjct 788 -CCA--ACAA---ATGGATCATTATAAGTTTTCAGCTTCTT---GCGAGATACAGAATGT 838
Query 563 TCTCTACTCT-GCTTCTGATGGAGCGTTCAGATGGTATGACACTGACATAA-GTATGTGG 620
| | |||||| | | || |||||| ||||||||||||||||||| || || | ||||||
Sbjct 839 TTTGTACTCTTG-TACTCATGGAGTGTTCAGATGGTATGACACTAACGCAATG-ATGTGG 896
Query 621 AGAAATTTGGTAGGACTTCCCAAGTTATTAC--ATCTT-GGTTATCGTG----T-T-A-G 670
||| ||||| ||| || | | | ||| || || |||| | ||| | | | |
Sbjct 897 AGAGATTTGA-AGGGTTTGGTAGG--ACTACCTATGTTCGGTTCTGGTGCCAATGTTAAG 953
Query 671 ATTGGCTGACTATGGCGGAAAGCTAGCTGTTTTGTGGGAAGAGGAGCTGCCTTATTATTC 730
|||||||| ||||| ||||| || | ||||||||||| |||||| |||||| | |
Sbjct 954 -TTGGCTGATTATGGAGGAAAATTAACGGTTTTGTGGGAGGAGGAGTTGCCTTCTCGT-- 1010
Query 731 TGGGACTTC-TCTCCGCTATGAGAAGATGATTTGGTGTGCGGAGATTTCGCTTGAAAGGC 789
|| || | | | ||||| ||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1011 -GG-ACCTGATAGCGGCTATAAGAAGATGATTCGGTGTGCAGAGATTGCGCTTGAAAGGC 1068
Query 790 GCAAAAGTTGGGAAATTTGGGGGAATGTTGAGTGGTTTGATCATATGCTTAC 841
|||||||||| ||||||||||||| |||||||||||||| | || |||||||
Sbjct 1069 GCAAAAGTTGTGAAATTTGGGGGATTGTTGAGTGGTTTGGTGATGTGCTTAC 1120
> AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15477324-15479040 FORWARD LENGTH=1074
Length=1074
Score = 231 bits (125), Expect = 7e-60
Identities = 371/483 (77%), Gaps = 44/483 (9%)
Strand=Plus/Plus
Query 27 aag-aagaagaagaagTCAAGTGGGTATGTTTTGGCTAGAGTCCCAATTCC-CGATTCTC 84
||| || ||||||||||||||||||||||||||||||| ||| ||||||| | || |||
Sbjct 294 AAGTAATAAGAAGAAGTCAAGTGGGTATGTTTTGGCTACAGTATCAATTCCAC-ATCCTC 352
Query 85 CT-TGTGTGCA-C-TTCTCGGGTCTTGTAGCGGTTGGTTCTAATATCTACAACATTGGC- 140
| | |||||| | ||| | | ||| || ||||||||||||||||||||||||||||||
Sbjct 353 GTCT-TGTGCAACGTTC-CAG-TCTCGTGGCGGTTGGTTCTAATATCTACAACATTGGCA 409
Query 141 GAATCCATAAATTTTTCGCTCTCCTCGAGCGTCTCTG-TTCTGGATTGCCGGTCTCACAC 199
|| |||||| | | || | ||| || ||||| | || | |||||||||||||||||
Sbjct 410 GA-TCCATA--TCA--C-CT-TACTCTAGTGTCTC-GATTTTTGATTGCCGGTCTCACAC 461
Query 200 GTGGCGCGAGGCTCCAAGCTTGCCGGTGAAGCTAATTTCACTCTCTGCTAGCGTCTTTGA 259
|||||||||||||||||||||||| ||| ||||| || | | |||||| ||||| ||||
Sbjct 462 GTGGCGCGAGGCTCCAAGCTTGCCAGTGGAGCTAGTTGAAGTTTCTGCTGGCGTCCTTGA 521
Query 260 TAGAAAGATATATGTCGCAGGGGCCGCAGGGCGGTACAACGATGTCCG-TTC-CGATAAT 317
||||||||||||| || ||| | | | | || |||| | ||| | |||
Sbjct 522 CGGAAAGATATATGT---AG---CCGGAAGTTGC-A-AA-GATGGA-GATTCTCT-TAAC 570
Query 318 TTGAAGACCTCGTTGGAAGTGTTCGACACAAAAACACAAACTTGGGATCCTG-AGCCCAT 376
||||||| | | || || ||||||||||||||||||||| |||||||| || | || ||
Sbjct 571 TTGAAGAACACTTTCGAGGTGTTCGACACAAAAACACAAGTTTGGGATCATGTA-CCTAT 629
Query 377 CCCTTGCAGTGAGATAAAAGACAGC-TTTAATTGCAGAAGCATATGGATTGACGGAAAGT 435
||||| || || | |||| ||| | |||| | || |||| |||| ||||||| |||||
Sbjct 630 CCCTTACAACGAAACAAAACACAACATTTACTC-CAAAAGCTTATGTATTGACGAAAAGT 688
Query 436 TCCATGT-GGCGACTCACA-AAGATTTG-TTTGCTTACAAATCC-AAGGAAGGTAGATGG 491
|||| || | || | | || | || ||| ||||||| ||| ||| |||||| ||||
Sbjct 689 GGTATGTAGGGG-CTAAGAGAA-AGGTGGTTT-CTTACAA-TCCCAAGAAAGGTATATGG 744
Query 492 GAC 494
|||
Sbjct 745 GAC 747
> AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:13098141-13099531 REVERSE LENGTH=1391
Length=1391
Score = 176 bits (95), Expect = 3e-43
Identities = 201/250 (80%), Gaps = 15/250 (6%)
Strand=Plus/Plus
Query 41 GTCAAGTGGGTATGTTTTGGCTAGAGTCCCAATTCCCGATTCTCC-TTGTGTGCACTTCT 99
||||||||| ||||| ||||| ||| ||||||||||| ||||||| ||| | || |
Sbjct 345 GTCAAGTGGTTATGTCTTGGCAAGAATCCCAATTCCCCATTCTCCTTTGACT-CAGAGAT 403
Query 100 CGGGTCTTGTAGCGGTTGGTTCTAATATCTACAACATTGGCG-AATCC--ATA--AATTT 154
| || | |||||||||||||||||||| |||||||||| || || ||| | |
Sbjct 404 ATAGCCTCGCGGCGGTTGGTTCTAATATCTATAACATTGGCGTAA-CCAGATACCACCAT 462
Query 155 TTCG-CTCTCCTCGAGCGTCTCTGTTCTGGATTGCCGGTCTCACACGTGGCGCGAGGCTC 213
|| | | |||||| || |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 463 TT-GAC-CTCCTCTAGTGTCTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTC 520
Query 214 CAAGCTTGCCGGTGAAGCTAATTTC-ACTCTCTGCTAGCGTCTTTGAT-AGAAAGATATA 271
|||||||||||||| ||||| ||| | | |||| ||||||| ||||| | |||||||||
Sbjct 521 CAAGCTTGCCGGTGGAGCTA-TTTAGAGTTTCTGTTAGCGTCCTTGATCA-AAAGATATA 578
Query 272 TGTCGCAGGG 281
||| ||||||
Sbjct 579 TGTAGCAGGG 588
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 150 bits (81), Expect = 2e-35
Identities = 261/342 (76%), Gaps = 35/342 (10%)
Strand=Plus/Plus
Query 520 ATCATTATTTGTATTCAGATTCTTATTGCAAGATAGACAATGTTCTCTACTCTGCTTCTG 579
|||| ||| || ||||||||||||||| ||||||| || || | ||||||| || |
Sbjct 816 ATCAGTATATGCGTTCAGATTCTTATTGTGAGATAGATGATATTTTGTACTCTG-TT-T- 872
Query 580 AT-G--GAGC-GTTCAGATGGTATGACACTGACATAAGTATGTGGAGAAATTTGGTAGGA 635
|| | || | ||| | ||||||||||||||| ||| | ||||||| |||||| |||
Sbjct 873 ATAGCAGAACGGTT-ATATGGTATGACACTGAGGCAAGCAGGTGGAGATATTTGG-AGGG 930
Query 636 CTT--CCCAAGTTA--TTACATCTTGGT--TATCGTGTTAGATTGGCTGACTATGGCGGA 689
||| ||| ||| || | ||||||| | || | |||| |||| || |||
Sbjct 931 CTTAGGACAACTTACGTTTCCTCTTGGTGCT-TC-TATTAG---GGCT---TA----GGA 978
Query 690 AAGCTAGCTGTTTTGTGGGAAGAGGAGCTGCCTTATTATTCTGGGACTTCTCTCCG-CTA 748
||| |||| ||||||||||| ||||| ||| |||| || | |||| | | || |||
Sbjct 979 AAGTTAGCGGTTTTGTGGGACGAGGATTTGCTTTATGGTT-T--GACTAGT-TTCGTCTA 1034
Query 749 TGAGAAGATGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGCAAAAGTTGGGAAA-TTT 807
| |||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct 1035 TAAGAAGAAGATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGCAAAAGTTGCGAAAGTTT 1094
Query 808 GGGGGAATGTTGAGTGGTTTGATCATATGCTTACAGTCCCTA 849
||| || ||||| |||||||||||| |||||||||| ||||
Sbjct 1095 TGGG-AA-GTTGAATGGTTTGATCATGTGCTTACAGTGCCTA 1134
Score = 71.3 bits (38), Expect = 2e-11
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 161 CTCCTCGAGCGTCTCTG-TTCTGGATTGCCGGTCTCACACGTGGCGCGAGGCTCCAAGCT 219
|||||| | |||||| | ||||||||||||||||||||||||||||| ||| || |||||
Sbjct 439 CTCCTCTAACGTCTC-GATTCTGGATTGCCGGTCTCACACGTGGCGCCAGGTTCAAAGCT 497
> AT1G61542.1 | Symbols: | pseudogenen of kelch repeat-containing
F-box family protein | chr1:22704010-22704396 FORWARD LENGTH=264
Length=264
Score = 87.9 bits (47), Expect = 2e-16
Identities = 86/103 (83%), Gaps = 9/103 (9%)
Strand=Plus/Plus
Query 750 GAGAA-GATGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGCAAAAGTTGG-GA--A-A 804
||||| | |||||||||||||||||||||||||||||||||| | ||| || | |
Sbjct 115 GAGAATG-TGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGTGGT-GATGGAGATGAGA 172
Query 805 TTTGGGGGAATGTTGAGTGGTTTGAT-CATATGCTTACAGTCC 846
|||||||||| ||||||||||||||| | | ||||| ||||||
Sbjct 173 TTTGGGGGAAAGTTGAGTGGTTTGATGC-TGTGCTTCCAGTCC 214
> AT1G61550.1 | Symbols: | S-locus lectin protein kinase family
protein | chr1:22704198-22707826 REVERSE LENGTH=2982
Length=2982
Score = 87.9 bits (47), Expect = 2e-16
Identities = 86/103 (83%), Gaps = 9/103 (9%)
Strand=Plus/Minus
Query 750 GAGAA-GATGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGCAAAAGTTGG-GA--A-A 804
||||| | |||||||||||||||||||||||||||||||||| | ||| || | |
Sbjct 2933 GAGAATG-TGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGTGGT-GATGGAGATGAGA 2876
Query 805 TTTGGGGGAATGTTGAGTGGTTTGAT-CATATGCTTACAGTCC 846
|||||||||| ||||||||||||||| | | ||||| ||||||
Sbjct 2875 TTTGGGGGAAAGTTGAGTGGTTTGATGC-TGTGCTTCCAGTCC 2834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5