BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929437
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-5... 1657 0.0
> AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-5495615
REVERSE LENGTH=1083
Length=1083
Score = 1657 bits (897), Expect = 0.0
Identities = 1027/1090 (94%), Gaps = 8/1090 (1%)
Strand=Plus/Plus
Query 21 ATGTCGAAATTTCTCCCGGAAGAATTAGCCATTGAGATAT-TAGTGAGGCTATCGATGAA 79
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1 ATGTCGAAATTTCTCCCGGAAGAATTAGCCATTGAGAT-TCTAGTGAGGCTATCGATGAA 59
Query 80 GGATCTTGCTCGATTCAGATGCGTCTGCAAGACATGGAGAGATCTTATCAACGACCGTGG 139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 60 GGATCTTGCTCGATTCAGATGCGTCTGCAAGACATGGAGAGATCTTATCAACGACCCTGG 119
Query 140 ATTCGCAGAAACGTACCGAGACATTTCTCCGGCAAAGTTCGTGTCGTTTTACGACAAGAA 199
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 ATTCACAGAAACGTACCGAGACATGTCTCCGGCAAAGTTCGTGTCGTTTTACGACAAGAA 179
Query 200 CTTTTACATGCTTGACGTAGAAGACAAGCATCCGGTTATGACAAACCCTCATAAGCTCGA 259
|||||||||||||||||| |||| ||||||||||||||| |||||| | | ||||||
Sbjct 180 CTTTTACATGCTTGACGTTGAAGGCAAGCATCCGGTTATTACAAAC----A-A-GCTCGA 233
Query 260 TTTCCCTTTGGATCAGTCAATGATCGATGAATCAACATGTGTGCTTCATTGTGATGGGAC 319
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 234 TTTCCCCTTGGATCAGTCAATGATCGATGAATCTACATGTGTGCTTCATTGTGATGGGAC 293
Query 320 GTTATGTGTCACCTTAAAGAATCACACTTTCATGGTTTGGAATCCGTTTTCGAAGCAATT 379
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 TTTATGTGTTACCTTAAAGAATCACACTTTAATGGTTTGGAATCCGTTTTCGAAGCAATT 353
Query 380 CAAGATCGTACCAAATCCCGGTATATACCAAGATTCGAACATTCTTGGTTTCGGTTATGA 439
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 354 CAAGATCGTACCAAATCCCGGTATATACCAAGATTCAAACATTCTGGGTTTCGGTTATGA 413
Query 440 TCCGGTTCACGATGATTACAAACTCGTAACGTTTATCGACCGGCTTGATGTTTCCACAGC 499
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 414 CCCGGTTCACGACGATTACAAAGTCGTAACGTTTATCGACCGGCTTGATGTTTCCACGGC 473
Query 500 GCACGTTTTCGAATTTAGAACCGGTTCATGGAGAGAGAGCCTACGGATAGCTTATCCTGA 559
||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 474 GCATGTTTTCGAATTTAGAACCGGTTCATGGGGAGAGAGCCTACGTATTTCTTATCCTGA 533
Query 560 TTGGCATTACAGAGACAGAAGAGGTACATTTTTGGACCAATACCTCTATTGGATTGCGTA 619
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTGGCATTACAGAGACAGGAGAGGTACATTTTTGGACCAATACCTCTATTGGATTGCGTA 593
Query 620 CCGGTCTAATGCTGACCGGTTTATCATACGCTTTAATATCTCAACCCATGAATACCGGAA 679
|||||||| |||||||||||||||| || |||||||| ||||||| ||||||||||| ||
Sbjct 594 CCGGTCTAGTGCTGACCGGTTTATCCTATGCTTTAATCTCTCAACACATGAATACCGAAA 653
Query 680 ATTCCCTCTCCCGGTTTTCAACCGAGGCGTGACGTGTTCATGGCTAGGCGTTAGAAGTCA 739
| ||||||||||||||| ||||| ||||||||||| ||||||| ||||||||| ||||||
Sbjct 654 ACTCCCTCTCCCGGTTTACAACCAAGGCGTGACGTCTTCATGGTTAGGCGTTACAAGTCA 713
Query 740 AAAACTCTGTATTACAGAGTATGAAACGTGCAAGAAGGAGATTCGGATTTCGGTTATGGA 799
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 714 AAAACTCTGTATTACAGAGTATGAAATGTGCAAGAAGGAGATTCGGATTTCGGTTATGGA 773
Query 800 GAAAACCGGGTCATGGAATAAGATTATAAGCCTTTCAATGTCGAATTTCATCTCTGCACA 859
||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 774 GAAAACCGGATCATGGAGCAAGATTATAAGCCTTTCAATGTCGAGTTTCATCTCTGTACA 833
Query 860 AGATCGTATCTACGATTATCAAGTCGAATTCGTGGCGTATACTAAAAAGAACGATCTCGT 919
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 834 AGATCGTATCTACGATTATCAAGTCGAATTCGTGTCGTTTACTAGAAAGAACGATCTCGT 893
Query 920 CGTAACATTCACTGGATACAACGATAATTTGGAGATGGAACCTGAAGAACGTACGAAGAA 979
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 894 CGTAACATTCACTGGATACAACGATCATTTCGAGATGGAACCTGAAGAGCGTACGAAGAA 953
Query 980 GAAGGTGTTCTTGTACAAAACCGGAGACGAGACATCGGAACAAGTCCGGTTCTGTAACTC 1039
|||| |||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| |
Sbjct 954 GAAGATGTTCTTGTACAAAACCGGAAACGAGAGATCTGAAGAAGTCCGGTTCTGTAACCC 1013
Query 1040 TCTAGCCGGGTTACGGTTTCTCTGTGAATGTGTGGAGACTCCTAAGATTATTAATCGCAT 1099
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1014 TCTAGCCGGGTTACGGTTTCTCTGTGAATGTGTGGAGACTCTTAAGATTGTTAATCGCAT 1073
Query 1100 ATTTATTTGA 1109
||||||||||
Sbjct 1074 ATTTATTTGA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5