BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929441
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16250.1 | Symbols: NDF4 | NDH-dependent cyclic electron flo... 1033 0.0
> AT3G16250.1 | Symbols: NDF4 | NDH-dependent cyclic electron flow
1 | chr3:5506931-5508414 REVERSE LENGTH=869
Length=869
Score = 1033 bits (559), Expect = 0.0
Identities = 618/647 (96%), Gaps = 2/647 (0%)
Strand=Plus/Plus
Query 1 AAAAAAGATCAGAGCAAGACTATGGGAAGTGTACAGTTGAATGGTTCAGGCTTAGTAGCT 60
|||||||| ||| |||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 76 AAAAAAGA--AGAACAAGACTATGGGAAGTGTACAGTTGAGTGGTTCCGGCCTAGTAGCT 133
Query 61 TCTCTACCTCCAAATCATAGCTTTAGCCACAAAACCAAACTTAGTAATCCAAAGTCATAC 120
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||| || |||
Sbjct 134 TCTCTACCTCCAAATCATAGCTTTAGCCACAAGACCAAACTTAATAAGCCAAATTCGTAC 193
Query 121 TTCTTGCGCTCAAAACACAATGCCGCCGGAACCAAAACCGTCCGAGCCATAAGCACCGCA 180
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 194 TTCTTTCGCTCAAAACACAATGCCGCAAGAACCAAAACCGTCCGAGCCATAAGCACCGCA 253
Query 181 CCAGCGAGCCAGCCTCCAGCCGCAGATGAGTCTGACGAACCTCCTGCTGTCGATTTTGCG 240
||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 254 CCAGCGAGCCAGCCTCCAGCCGCTGATGAGCCCGACGAACCTCCTGCTGTCGATTTTGCG 313
Query 241 TTCATCCATTCGGTGTTGTTGCCGGACGGGACACCGGACGTGCATTGGAGAAGAGCGTGT 300
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 314 TTCGTCCATTCGGTGTTGTTGCCGGACGGGACACCGGACGTACATTGGAGAAGAGCGAAC 373
Query 301 GGTGGACAGAAACTAAGAGACATAATGTTGGATTCTAACATCGAACTCTATGGTCCTTAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGTGGACAGAAACTAAGAGACATAATGTTGGATTCTAACATCGAACTCTATGGTCCTTAT 433
Query 361 AGTAAGCCTTTGTCAAACTGCGCAGGAGTAGGAACTTGCGCTACTTGCATGGTCGAGATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AGTAAGCCTTTGTCAAACTGCGCAGGAGTAGGAACTTGCGCTACTTGCATGGTCGAGATT 493
Query 421 GTTAATGGAAAGGAGCTTTTAAATCCACGAACAGAGATTGAGAAGGAGAAACTCAAAAGG 480
|| ||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||
Sbjct 494 GTAAATGGAAAGGAGCTTCTAAATCCGCGAACTGATATTGAGAAGGAGAAACTCAAAAGG 553
Query 481 AAACCAAAAAATTGGAGACTAGCTTGTCAAACCAACGTGGGAAATCCAGATTCTACCGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AAACCAAAAAATTGGAGACTAGCTTGTCAAACCAACGTGGGAAATCCAGATTCTACCGGA 613
Query 541 TTGGTTGTCATACAACAATTGCCAGAGTGGAAAGCTCATGAATGGAACATCCCTAAGAAT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 614 TTGGTTGTCATACAACAATTGCCAGAGTGGAAAGCTCATGAGTGGAACATCCCTAAGAAT 673
Query 601 ATACCTAATGACGATGATCTCGAAACTTCTACGTGAAACCATCCATT 647
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 674 ATACCTAATGACGATGATCTCGAAACTTCTACTTGAAACCATCCATT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5