BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929442
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51171.1 | Symbols: | F-box and associated interaction doma... 723 0.0
AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 429 3e-119
> AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19010805-19012008 FORWARD LENGTH=1204
Length=1204
Score = 723 bits (391), Expect = 0.0
Identities = 888/1119 (79%), Gaps = 69/1119 (6%)
Strand=Plus/Plus
Query 54 GAGGAAGATATACTCTCTCGGCTTCCA-CCTCTCTCTCTTGCTCGTTTCAGATCAGTTTG 112
|||||||||||||| ||||| ||| || || | ||||||| ||| |||||||| |||||
Sbjct 76 GAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTCGATTCAGATCCGTTTG 134
Query 113 CAAACTATGGAATGATCTTTTCAACGAAAATAGGTTCATCAACGACCACTTTGGC-CGCG 171
||||| ||||||| |||||||| | ||||| || |||||||| ||||| || || || |
Sbjct 135 CAAACGATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAAAAACCAC-TTCGCTCGTG 193
Query 172 CCCGGCCTCAATTCATCTTAC-TGGA-CAATTCCAATATTTATTCGATAGAAATCATCGA 229
| | ||||| |||||||| | | || | |||||||||||||||||||||| |||||||
Sbjct 194 CTTGTCCTCAGTTCATCTT-CAT-GACCGATTCCAATATTTATTCGATAGAGATCATCGG 251
Query 230 TTTAGACGGCATTGATCCAACCA-TAGAATTGCGTGAGCTAGCCTCCTCTGGTATTCCTT 288
| | |||||| |||||||||| | || | || |||| ||||| |||||||||||| ||||
Sbjct 252 TCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCTAGACTCCTCTGGTATCCCTT 310
Query 289 ACCGGGAAT-TAGATTTGGATCACACAACCATCACTACTTGCGATGGGTTCTTGTTTTGT 347
|||| || | | |||| | | ||| |||||||||| |||||||||||||||||||||||
Sbjct 311 ACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGT 369
Query 348 AACTTTTTTGTTTCG-GCTAAGGGGACAGCACTTTGGAATCCGTGGTTGAGACAGGTTAA 406
||| | || | | | ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 370 AAC-TCTTGGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAA 428
Query 407 ATGGATCGAGTACGAGGATAAAGAGTT-CTATGTTTTTGGCTTAGGATACGATAATACTA 465
||||||||||||||||||||||| ||| | |||| | |||||||||||||||||||||||
Sbjct 429 ATGGATCGAGTACGAGGATAAAG-GTTTCAATGTCTGTGGCTTAGGATACGATAATACTA 487
Query 466 TAC-CGAAAAAGTATTACAGGATCTTTGGGTATTTTGTGCGTCATCGTCAAG-TCCAGAG 523
| || ||| || ||||| ||||| |||||||| || ||| | | ||| | |||
Sbjct 488 GAGACGGAAAGGT-TTACAAAATCTTGGGGTATTTAATGTGTCGCCCTGAAGATGG-GAG 545
Query 524 -----A-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTAAGT 576
| | || |||||||||||||||| || ||||| |||| ||||| ||||| ||||
Sbjct 546 CTCTTACGTAT-ACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGT 604
Query 577 ATATTGATACACCTGA-CGAGGACTGGC-CCATAAAGCAA-GCTACACGAGGAAATGTGT 633
|||||| | | | || | |||||||| || ||| | | | ||||||| | |||||
Sbjct 605 TTATTGAAATATC-GAACAAGGACTGGTTCC-TAAC-CGATGTTACACGATTCAGTGTGT 661
Query 634 CCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTAT-TACATC 692
| ||||||||||||||||||||| || || || |||||||||| |||| | | | ||||
Sbjct 662 CTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACACTGATGACTTTCT-CATC 720
Query 693 CAAAGCTTTGATTTCTCGAGGGATATA-GTCAAAGCTTTTTGTCTCACT-CCGTGTAGGA 750
||| | ||||||||||| ||||| ||| | |||| | |||||||| || || ||| |||
Sbjct 721 CAATGTTTTGATTTCTCTAGGGAGATATG-CAAACCCTTTTGTCTT-CTTCCTTGTCGGA 778
Query 751 AGAACCGAT-CTCGCGATGTACTTTTCCTCTCAGTTTTTAAGGGAGATGGGTTTTCCTTG 809
|| ||| || |||| ||||| | |||||| | ||||||| |||| ||||||
Sbjct 779 AGTTT-GATGCTTTCGATTTACTTGTA-----AGTTTTCAGGGGAGATAGGTTATCCTTG 832
Query 810 TTAAAGCAATGTTATGTGACAAGGA-GCGTCGAGATTTGGGTTACGAAGAAGAAGATTGA 868
||||||||||||||| |||||||| | || |||||||||||||||||||| ||||||||
Sbjct 833 TTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACGAAGAATAAGATTGA 891
Query 869 TACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTGCCAA 924
||||||||||||| |||| || || | ||||||||||| |||| ||| |||| |
Sbjct 892 TACTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTCACTTGTTGACGTTGCTAC 950
Query 925 CAACTAACTTGCCAAGCTTAATTAATA-AGTTTTATGGCATTAGTTATTTCATCTATGAC 983
||| ||||||||||| |||| ||| | ||| ||||||||||||||| ||||||||||||
Sbjct 951 CAAATAACTTGCCAAACTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGAC 1009
Query 984 AAGACCACCCTT-ATCATGTGTTGTTG-TGACGATGAAAA-T-AGAGCCACTTGCATCTA 1039
||||||||| || ||||| | |||| | |||||| ||| | | | || ||||||||||
Sbjct 1010 AAGACCACC-TTCATCATTTATTGT-GCTGACGA-GAACACTTAT-GCGGCTTGCATCTA 1065
Query 1040 TATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTCTGGGGTTTTCCAGT-GTT 1098
|||||| |||||||||||| |||||||| || ||| | | ||||||| || |||
Sbjct 1066 TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCATGGTTTTCT-GTTGTT 1124
Query 1099 GTCA-CTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135
| | ||||||||||||||||||||| ||||| || |||
Sbjct 1125 AT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCT 1162
> AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542
FORWARD LENGTH=1050
Length=1050
Score = 429 bits (232), Expect = 3e-119
Identities = 594/760 (78%), Gaps = 59/760 (8%)
Strand=Plus/Plus
Query 403 TTAAATGGATCGAGTACGAGGATAAAGAG-TTCTATGTTTTTGGCTTAGGATACGATAAT 461
|||||||||||||||||||| |||||| | ||| |||| | |||| ||||||||||||||
Sbjct 314 TTAAATGGATCGAGTACGAGAATAAAG-GTTTCAATGTATGTGGCGTAGGATACGATAAT 372
Query 462 ACTATACC-GAAAAAGTATTACAGGATCTTTGG-GTATTTTGTGCGTCATCGT-CA-AG- 516
|||| || || || || ||||| ||| |||| |||||| | | ||| ||| | ||
Sbjct 373 ACTAGGCCTGAGAAGGT-TTACAAAATC-TTGGAGTATTTAGAGTGTCGCCGTGAAGAGA 430
Query 517 TC-CAGAGA-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTA 573
| | || | | | | | ||||||||||||| || |||||||||| ||||| ||||| |
Sbjct 431 GCTC-GA-ACGCA-TGCTACCAGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCA 487
Query 574 AGTATATTGATACACCTGACGAGGACTGGCCCATAAAGC-AAGCTAC-ACGAGGA-AATG 630
||| ||||||||| || || ||| |||| ||| |||| | | | | |||| | | ||
Sbjct 488 AGTTTATTGATACTTCTAACAAGGTCTGGTTCAT-AAGCGATG-TTCAACGA-TACAGTG 544
Query 631 TGTCCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATT-AC 689
||| |||||||||||||||||||||| || | | | | | |||| | || |
Sbjct 545 TGTGCTTGAACGGAAATCTCTATTGGCTTTC-T-T--T--------TGATGACT-TTCGC 591
Query 690 ATCCAAAGCTTTGATTTCTCGAGGGATATAGTCAAAGCTTTTTGTCTCAC-TCCGTGTAG 748
|||| | ||||||||||||||||||| ||||||||| | ||||||||| | ||||||| |
Sbjct 592 ATCCTATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTC-CTTCCGTGTCG 650
Query 749 GAAGAACCGAT--CTCGCGATGTACTTTTCCTCTC-AGTTTTTAAGGGAGATGGGTTTTC 805
|||| ||| | ||||| ||||| |||| | |||||| ||||||||| |||| ||
Sbjct 651 GAAG-TTTGATAAAT-GCGATTTACTTGCCCTC-CAAGTTTTCAAGGGAGATAGGTTATC 707
Query 806 CTTGTTAAAGCAATGTTATGTGACAAGGAGCG-TCGAGATTTGGGTTACGAAGAAGAAGA 864
||||||||| ||||||| | |||||||| || | |||||||||||||||||||||||||
Sbjct 708 CTTGTTAAATCAATGTTGTAAGACAAGGA-CGATTGAGATTTGGGTTACGAAGAAGAAGA 766
Query 865 TTGATACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTG 920
||||| ||||||||||| |||| || || | |||||||||||| ||| ||| ||||
Sbjct 767 TTGATTCTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTAGCTTGTTGACTTTG 825
Query 921 CCAACAACTAACTTGCCAAGCTTAATTAATAAGTTTTATGGCATTAGTTATTTCATCTAT 980
||| ||| ||||||||||| |||| ||| | || ||||||||||||||| |||||||||
Sbjct 826 CCACCAAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTAT 885
Query 981 GACAAGACCACCCTTA-TCATGTGTTGTTGT-GACGATGAAAA-TAGAGCCACTTGCATC 1037
|||||||||||| ||| |||| | |||| | ||||| ||| | | ||| ||||||||
Sbjct 886 GACAAGACCACC-TTAATCATTTATTGT-GAAGACGA-GAACACTTCAGCGGCTTGCATC 942
Query 1038 TATATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTC-TGGGGTTTTCCAGTG 1096
||||| | ||||| ||||||||||||||| || |||| |||| | | ||| | ||
Sbjct 943 TATATCATCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCTGCTTT-CTTTTG 1001
Query 1097 TTGTCACTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135
|| |||||||||||||||||||||||| ||||| || |||
Sbjct 1002 TTATCACTGTGTTTATGCTCCCAATTTTATCCCTCTTCCT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5