BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929447
Length=2126
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16270.1 | Symbols: | ENTH/VHS family protein | chr3:551327... 3474 0.0
> AT3G16270.1 | Symbols: | ENTH/VHS family protein | chr3:5513273-5516932
FORWARD LENGTH=2764
Length=2764
Score = 3474 bits (1881), Expect = 0.0
Identities = 2045/2124 (96%), Gaps = 12/2124 (1%)
Strand=Plus/Plus
Query 3 TTTTATTTCGAATTCGACATGGATACGAGCAGGAGAGCTGTAGAATCGTATTGGAGGTCG 62
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 282 TTTTGTTTCGAATTCGCCATGGATACGAGCAGGAGAGCTGTGGAATCGTATTGGAGGTCG 341
Query 63 CGGATGATAGATGGGGTTACGTCTGATGAGGACAAAGTAGCGCCTGTGTACAAATTGGAA 122
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 342 CGGATGATAGATGCGGTTACGTCTGATGAGGACAAAGTTGCGCCTGTGTACAAATTGGAA 401
Query 123 GAGATCTGTGACCTCCTTCGTTCTTCTCATGTCAGCATCGTCAAGGAGTTTTCTGAATTC 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GAGATCTGTGACCTCCTTCGTTCTTCTCATGTCAGCATCGTCAAGGAGTTTTCTGAATTC 461
Query 183 ATTTTGAAACGTCTTGATAACAAAAGCCCTATTGTTAAGCAGAAGGCTCTTAGGTTGATA 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 462 ATTTTGAAACGTCTTGATAACAAAAGCCCCATTGTTAAGCAGAAGGCTCTTAGGTTGATA 521
Query 243 AAGTATGCTGTGGGAAAGTCTGGATCAGAGTTTAGACGAGAAATGCAAAGGAACTCGGTT 302
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 522 AAGTATGCTGTGGGAAAGTCTGGCTCAGAGTTTAGACGAGAAATGCAAAGGAATTCGGTT 581
Query 303 GCAGTGCGCAATCTATTCCATTACAAGGGGCATCCAGATCCTTTAAAAGGGGATGCACTT 362
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 582 GCAGTGCGCAATCTATTCCATTACAAGGGGCATCCAGATCCTTTAAAAGGAGATGCACTT 641
Query 363 AATAAGGCTGTACGGGAAACTGCTCATGAAACAATATCTGCTATATTCTCGGAAGAGAAC 422
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 642 AATAAGGCTGTACGGGAAACTGCTCATGAAACAATTTCTGCTATATTCTCAGAAGAGAAT 701
Query 423 GGTACTAAACCAGCTGCTCCTGAAAGCATCAACAGACGCATTGAAGGATTCGGGAATACT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GGTACTAAACCAGCTGCTCCTGAAAGCATCAACAGACGCATTGAAGGATTCGGGAATACT 761
Query 483 AACTTTCAGGTGCCCTCAAATGATAATAAATCGTTCCTGAGTGAGGTGGTGGGTATTGGA 542
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 762 AACTTTCAGGTGCCCTCTAATGATAATAAATCGTTCCTTAGTGAGGTGGTGGGTATTGGA 821
Query 543 AGTGCATCTATAAAGCAAGGAATCAGTAATTTTGCTCAAGGCCATTTGCCAAAGAAGAAT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGTGCATCTATAAAGCAAGGAATCAGTAATTTTGCTCAAGGCCATTTGCCAAAGAAGAAT 881
Query 603 GAGAATGGAAGCAGCAGCTACAGAGGTCCAAATCTCCACAGATCATTAACTATGGAAAAT 662
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GAGAATGGCAGCAGCAGCTACAGAGGTCCAAATCTCCACAGATCATTAACTATGGAAAAT 941
Query 663 GAGAACTTCAGTAGATACGATCCAGTTAAGCTGGGGAAGGATGGTAACTACGGAATGTCT 722
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 942 GAGAACTTCAGTAGATATGATCCAGTTAAGCTGGGGAAGGATGGTAACTACGGAACGTCT 1001
Query 723 AAGAACACTACTGGTGGATCTTGGGGCCATGCTTCCGGAGAAGCAAGTGAAAGTTCTGCT 782
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1002 AAGAACACGACTGGTGGATCTTGGGGCCACGCTTCCGGAGAAGCAAGTGAAAGTTCTGCT 1061
Query 783 TCAGTTCGTGTTGAGAGCAAAACTCGTGAGGAAAAGCTGCTGGAAACCATTGTTACATCT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TCAGTTCGTGTTGAGAGCAAAACTCGTGAGGAAAAGCTGCTGGAAACCATTGTTACATCT 1121
Query 843 GGCGGTGTACGCCTGCAGCCAACTCGTGATGCTCTTCATGTTTTCATTTTAGAGGCTGCA 902
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGTGGTGTACGCCTGCAGCCAACTCGTGATGCTCTTCATGTTTTCATTTTAGAGGCTGCA 1181
Query 903 AAAATGGACGCTGTTGCTTTAAGCATTGCTCTTGACGGGAAGCTCCAGTCCCCAATGTGG 962
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1182 AAAATGGACGCTGTTGCTTTAAGCATTGCTCTTGACGGGAAGCTCCATTCTCCAATGTGG 1241
Query 963 CAGGTTCGGATGAAAGCTTTATGTGTCCTTGAGGCCATTTTGAGGAAGAAGGAAGATGAT 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CAGGTTCGGATGAAAGCTTTATGTGTCCTTGAGGCCATTTTGAGGAAGAAGGAAGATGAG 1301
Query 1023 AATTTTTCAATTGTACATACCTATTTTAGTGAAAACATGGATGCCATACAGCGATGCTCA 1082
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 1302 AATTTTTCAATTGTACATACCTATTTTAGTGAAAACTTGGATGCCATACAGCGGTGCGCA 1361
Query 1083 GAGTCTCCGCAATCTTCCCTTCGAGAAAAGGCTAACAAGGTTCTGAGCCTTCTAAATGGT 1142
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1362 GAGTCTCCACAATCTTCCCTTCGAGAAAAGGCGAACAAGGTTCTGAGCCTTCTAAATGGT 1421
Query 1143 GGACAGTCAAGTGGGTTGATGAGCAGCTCAGATAATACGGTGAAGCGAGAGGCTGCTGTA 1202
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1422 GGACAGTCAAGTGGGTTGATGAGCAGCTCTGATAATACTGTGAAGCGAGAGGCTGCTGTT 1481
Query 1203 GATTTACCTGACTTGATCGACACTGGTGATTCAGACTATATAACAGAAGATACTTTGAAC 1262
||||||||||||||||| ||||| |||||||||||| || ||||||||||
Sbjct 1482 GATTTACCTGACTTGATTGACACCGGTGATTCAGAC---------GA---TACTTTGAAC 1529
Query 1263 AATCTGAATGCTATAGATACTGGCAGTACTGTGGCGAAAGCAGCTCCATTGATGGATGAT 1322
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 1530 AATCTGAATGCTATAGATACTGGCAGTACAGTGGCGACAGCAGGTCCATTGATGGATGAT 1589
Query 1323 GATTGGTTTGGGGATAGCTCTGACACTGTACTGAGTAGCAGCGAGATGAAAAATGATGAC 1382
||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct 1590 GATTGGTTTGGGGATAGCTCTGACATTGGACTGAGTAGCAGCGAGAAGAAAACTGATGAC 1649
Query 1383 GACCCCTTTGCAGATGTATCATTTCATCCGAATGAAGCAAAAGAAAGTGCAGATGACCTG 1442
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1650 GACCCCTTTGCAGATGTCTCATTTCATCCGAATGAAGAAAAAGAAAGTGCAGATGACCTC 1709
Query 1443 TTCTCTGGAATGACTGTCGGGGAAAAGTCCGCTGCTGCTGGTGGTAATCATGTGCCTGAG 1502
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1710 TTCTCTGGAATGACTGTCGGGGAAAAGTCCGCTGCTGTTGGTGGTAATCATGTGCCTGAT 1769
Query 1503 CTATTTGATATGTTTGGGTCAACTGCAAAACTTGAAGCAGAGCCAAAAGATTCAAAAAAC 1562
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1770 CTATTTGATATGTTTGGGTCAACTGCAAAACTTGAAGCAGAGCCAAAAGATGCAAAAAAC 1829
Query 1563 ATAAATGATTTGATGGCAAGTTTCTCCATTGACGAAAACATTTCAAATCAGAAAGGCTCG 1622
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1830 ATTAATGATTTGATGGGAAGTTTCTCCATTGACGAAAACAATTCAAATCAGAAAGGCTCG 1889
Query 1623 TCTTCAAGCACCCTTCCAAAAGATTTATTTGCAATGCCGAGTACCACCAGCCACCAAGCA 1682
||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 1890 TCTTCAAGCACTCTTCCACAGGATTTATTTGCAATGCCGAGCACCACCAGCCACCAAGCA 1949
Query 1683 CCGGAAAATCCTGTTGGAGGGATTCTTGGCTCACAAAATCCTGGGTTTATTCAAAACACA 1742
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1950 CCGGAAAATCCTGTTGGAGGCATTCTTGGCTCACAAAATCCTGGGTTTATTCAAAACACA 2009
Query 1743 ATGCTTCCTGGGGGTGTTATGCCCTTCAATTTTCCTCCAGGGATGATGATGAATCCAGCT 1802
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2010 ATGCTTCCTGGAGGTGTTATGCCATTCAATTTTCCTCAAGGGATGATGATGAATCCAGCT 2069
Query 1803 TTTGCATCCCAACCTTTGAATTACGCTGCCATGGCAAGCTTGTTAGCTCAGCAGCAGCAG 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 TTTGCATCCCAACCTTTGAATTACGCTGCCATGGCAAGCTTGTTAGCTCAGCAGCAGCAG 2129
Query 1863 TACCTTGGTAATATATCCAACTTCCAGCAGTTTGGCAACCTGAACGCTCAGGGGAGCGGA 1922
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 2130 TACCTTGGTAATATGTCCAACTTCCAGCAGTTCGGCAATCTGAACGCTCAGGGTAGCGGA 2189
Query 1923 AATGTTCTTTCTATGGGTACTAGTGGAGGGAATCAGTCCGCACTCCCTGATATATTCCAG 1982
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2190 AATGTTCTTTCTATGGGTACAAGTGGAGGGAATCAGTCCGCACTCCCTGATATATTCCAG 2249
Query 1983 CCAAATTTTGGTAATCAGGCTCCAACCTCAACAATGAATGGTTCGAAAAAAGAAGATACC 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2250 CCAAATTTTGGTAATCAGGCTCCAACCTCAACAATGAATGGTTCGAAAAAAGAAGATACC 2309
Query 2043 AGAGCCTTCGATTTCATCTCCGATCATCTTGCATCAACCCGCGACACAAAGAGAGTATCT 2102
||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||
Sbjct 2310 AGAGCCTTCGATTTCATTTCTGATCATCTTACATCAGCCCGCGACACAAAGAGAGTATCT 2369
Query 2103 TGATGCTTGCTTACAAAATTCCGC 2126
||||| ||||||||||||||||||
Sbjct 2370 TGATGGTTGCTTACAAAATTCCGC 2393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105421144500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5