BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929448
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16280.1 | Symbols: | Integrase-type DNA-binding superfamil... 1051 0.0
> AT3G16280.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr3:5518331-5519246 FORWARD LENGTH=916
Length=916
Score = 1051 bits (569), Expect = 0.0
Identities = 689/746 (92%), Gaps = 11/746 (1%)
Strand=Plus/Plus
Query 1 GTATCAAAC--GAGTACAAAAAATGACGTCACTCAACAGCTCTTCATCACCAACACCGTC 58
||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| | ||
Sbjct 3 GTATCAAACGAGAGTACAAAAGATGACGTCACTCAACAGCTCTGCATCACCAACATCATC 62
Query 59 ATCATCTGACCAATCTGATGCAACTACTACAACAAGCACCGGCTTGTCTGAAGAAGAAGC 118
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 63 GTCATCAGACCAATCTGATGCAACTACTACAACAAGCACCCACTTGTCTGAAGAAGAAGC 122
Query 119 TCCACCGAGAAACAACAGCACAAGAAAGAGAAGAAGAGAttcttcttctgcttcatcttc 178
|||||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||
Sbjct 123 TCCACCCAGAAACAACAACACAAGAAAGAGAAGGAGAGATTCTTCTTCTGC-T--TCTTC 179
Query 179 ttcttcttcAAAGCAACATCCTGTTTACAGAGGTGTACGGATGAGAAGTTGGGGCAAATG 238
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 ATCTTCTTCAATGCAACATCCTGTTTACAGAGGTGTGCGGATGAGAAGTTGGGGCAAATG 239
Query 239 GGTCTCCGAGATTCGACAGCCTCGTAAGAAAACTCGTATTTGGCTCGGCACTTTCGCCAC 298
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 240 GGTCTCCGAGATCCGACAACCTCGTAAGAAAACTCGTATTTGGCTCGGCACTTTTGTCAC 299
Query 299 CGCTGATATGGCTGCTCGTGCTCACGACGTCGCTGCTCTCACCATCAAAGGATCCTCCGC 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 CGCTGATATGGCTGCTCGTGCTCACGACGTCGCTGCTCTCACCATCAAAGGCTCCTCCGC 359
Query 359 CGTCATTAA-TTTCCCTGAGCTTGCTTCTCTCTTCCCTCGTCCGGCGTCGTCTTCGCCGC 417
|||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 360 CGTC-TTAAATTTCCCTGAGCTTGCTTCTCTCTTCCCTCGTCCGGCGTCATCATCGCCGC 418
Query 418 ATGATATCCA-AGCAGCGGCCGCAGAAGCCGCCGCCATGGTGGTCGAAGAAAAAATGTCG 476
|||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 419 ATGATATCCAGA-CAGCCGCCGCAGAAGCCGCCGCCATGGTGGTCGAAGAAAAACTGTTA 477
Query 477 GATACAG-AGGCGACGCCGGAGGAACCACCGTCGTCGGAATCTTCTTACGTGGCGGCGGA 535
|| | || | | | | ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 478 GAGA-AGGATGAGGCTCCGGAGGCCCCACCTTCGTCGGAATCTTCTTACGTGGCGGCGGA 536
Query 536 GTCAGAGGAGGAGGAGAGGTTGGAGGAGATTGTGGAGCTGCCTAACATTGAAGAAGGGAG 595
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 537 GTCAGAGGATGAGGAGAGGTTGGAGAAAATTGTGGAGCTGCCTAACATTGAAGAAGGAAG 596
Query 596 CTATGACGAGAGCGTGACGTCACGCGCTGATCTGGCTTATTCTGAGCCGTTCGATTGTTG 655
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 TTATGACGAGAGTGTGACATCACGTGCTGATCTGGCTTATTCTGAGCCGTTCGATTGTTG 656
Query 656 GGTGTATCCTCCAGCTATGGATTTTTATGAAGAAATATCGGAATTTAATTTCGTGGAATT 715
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 GGTGTATCCTCCGGTTATGGATTTTTATGAAGAAATATCGGAGTTTAATTTCGTGGAATT 716
Query 716 ATGGAGCTTTAATCATTAATTAAGTT 741
|||||||||||||| ||||||||||
Sbjct 717 GTGGAGCTTTAATCACTAATTAAGTT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5