BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929451
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16580.1 | Symbols: | F-box and associated interaction doma... 195 2e-49
AT5G36660.1 | Symbols: | transposable element gene | chr5:1439... 104 4e-22
AT5G36737.1 | Symbols: | transposable element gene | chr5:1445... 104 4e-22
> AT3G16580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5647376-5648746 REVERSE LENGTH=1371
Length=1371
Score = 195 bits (105), Expect = 2e-49
Identities = 208/253 (82%), Gaps = 25/253 (10%)
Strand=Plus/Plus
Query 1 TTGATTGCGATAAGTTATTGCTATGTGGCATGGTGAAAGTAGCTGCGGTACGGTTTGGAA 60
||||||||||||||||||| ||||||| ||||| ||||| || | || | |||||||
Sbjct 320 TTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAG-T--TGT--GCTTTGGAA 374
Query 61 CCTGTGGCTGAGACATAGTACATGGATCGACCAGGGTTTAAACCACACTC-ATATGGACT 119
|| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
Sbjct 375 CCCGTGGCTGAGACATAGTACATGGATCGACCAGGGTTCAAACCACACTCGA-ATGGAGT 433
Query 120 CCTT-TGGCTTAGGATACAAATCATACAACAATAAGGGGAGTTACAAGATCGTTGCTAAT 178
| || |||| |||||||||| || | ||||||||||||||||||| ||||| |
Sbjct 434 C-TTATGGCATAGGATACAA--CA-A------TAAGGGGAGTTACAAGATCTTTGCTTTT 483
Query 179 TCTGGTCGGAAGGAAAACCCCACCAAGAGCTTGTTGACAAATGACAATCCATGAATTTGC 238
| || |||||||||||||| |||| |||| |||||||||| | | | |||| | |||
Sbjct 484 TGTGATCGGAAGGAAAACCACACCCAGAGATTGTTGACAA-T--C---C-ATGACTCTGC 536
Query 239 CTCTGATGCGTGG 251
|||||||||||||
Sbjct 537 CTCTGATGCGTGG 549
> AT5G36660.1 | Symbols: | transposable element gene | chr5:14396688-14399025
FORWARD LENGTH=2338
Length=2338
Score = 104 bits (56), Expect = 4e-22
Identities = 157/203 (77%), Gaps = 17/203 (8%)
Strand=Plus/Plus
Query 17 ATTGCTATGTGGCATGGTGAAAGTAGCTGCGGTACGGTTTGGAACCTGTGGC-TGAGACA 75
||||||| || |||||| ||||| |||| || ||||||||||| | || |||||||
Sbjct 181 ATTGCTACGTTGCATGGAGAAAGGAGCT---GT--GGTTTGGAACCCAT-GCTTGAGACA 234
Query 76 TAGTACATGGATCGACCAGGGTTTAAACCACACTCATATGGACTCCTTTGGCTTAGGATA 135
||| || |||||| || | |||| |||| ||||| ||||| |||| |||| ||||
Sbjct 235 GAGTGGATAGATCGAGCAAGATTTACACCAAACTCA-ATGGAATCCTATGGCATAGG--- 290
Query 136 CAAATCATACAACAATAAGGGGAGTTACAAGATCGTTGCTAATTCTGGTCGGAAGGAAAA 195
|||||||||||||||||||||||||||| ||||| || | ||| ||||||| |
Sbjct 291 ------ATACAACAATAAGGGGAGTTACAAGATCATTGCTGGTTGTCGTCTGAAGGAACA 344
Query 196 CCCCACCAAGAGCTTGTTGACAA 218
||||| |||| ||||| |||||
Sbjct 345 TCCCACAAAGACCTTGTGGACAA 367
> AT5G36737.1 | Symbols: | transposable element gene | chr5:14455987-14458324
FORWARD LENGTH=2338
Length=2338
Score = 104 bits (56), Expect = 4e-22
Identities = 157/203 (77%), Gaps = 17/203 (8%)
Strand=Plus/Plus
Query 17 ATTGCTATGTGGCATGGTGAAAGTAGCTGCGGTACGGTTTGGAACCTGTGGC-TGAGACA 75
||||||| || |||||| ||||| |||| || ||||||||||| | || |||||||
Sbjct 181 ATTGCTACGTTGCATGGAGAAAGGAGCT---GT--GGTTTGGAACCCAT-GCTTGAGACA 234
Query 76 TAGTACATGGATCGACCAGGGTTTAAACCACACTCATATGGACTCCTTTGGCTTAGGATA 135
||| || |||||| || | |||| |||| ||||| ||||| |||| |||| ||||
Sbjct 235 GAGTGGATAGATCGAGCAAGATTTACACCAAACTCA-ATGGAATCCTATGGCATAGG--- 290
Query 136 CAAATCATACAACAATAAGGGGAGTTACAAGATCGTTGCTAATTCTGGTCGGAAGGAAAA 195
|||||||||||||||||||||||||||| ||||| || | ||| ||||||| |
Sbjct 291 ------ATACAACAATAAGGGGAGTTACAAGATCATTGCTGGTTGTCGTCTGAAGGAACA 344
Query 196 CCCCACCAAGAGCTTGTTGACAA 218
||||| |||| ||||| |||||
Sbjct 345 TCCCACAAAGACCTTGTGGACAA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5