BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929459
Length=356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11750.1 | Symbols: | Ribosomal protein L19 family protein ... 185 2e-46
AT4G11630.1 | Symbols: | Ribosomal protein L19 family protein ... 174 4e-43
AT1G24240.1 | Symbols: | Ribosomal protein L19 family protein ... 174 4e-43
AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 137 6e-32
> AT5G11750.1 | Symbols: | Ribosomal protein L19 family protein
| chr5:3787230-3789212 FORWARD LENGTH=1089
Length=1089
Score = 185 bits (100), Expect = 2e-46
Identities = 110/115 (96%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 131 GGAAGTGCCTGAGAACAAGAGACGTTTATCAATCGTAAAAGGCGTTGTCATAGTAAGGCG 190
||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||
Sbjct 563 GGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCG 622
Query 191 TAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGGTGGAGTGGGC 245
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 623 TAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGCTGGAGTGGGC 677
> AT4G11630.1 | Symbols: | Ribosomal protein L19 family protein
| chr4:7019700-7021348 FORWARD LENGTH=1051
Length=1051
Score = 174 bits (94), Expect = 4e-43
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 131 GGAAGTGCCTGAGAACAAGAGACGTTTATCAATCGTAAAAGGCGTTGTCATAGTAAGGCG 190
||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||
Sbjct 531 GGAAGTGCCTGAGAACAAGAGACGTGTATCAATCGTGAAAGGCGTCGTCATAGCAAGGCG 590
Query 191 TAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGGTGGAGTGGGC 245
|||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 591 TAATGCTGGTCTGAACTCAACATTTAGAATTAGAAGGCTTGTTGCTGGAGTGGGC 645
> AT1G24240.1 | Symbols: | Ribosomal protein L19 family protein
| chr1:8586353-8588116 FORWARD LENGTH=893
Length=893
Score = 174 bits (94), Expect = 4e-43
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 131 GGAAGTGCCTGAGAACAAGAGACGTTTATCAATCGTAAAAGGCGTTGTCATAGTAAGGCG 190
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||
Sbjct 507 GGAAGTGCCTGAGAACAAGAGGCGTGTATCAATCGTAAAAGGCGTCGTCATAGCAAGGCG 566
Query 191 TAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGGTGGAGTGGGC 245
|||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 567 TAATGCTGGTCTCAACTCAACATTTAGAATTAGAAGGCTTGTTGCTGGAGTGGGC 621
> AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: carboxylesterases (TAIR:AT4G22300.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:6474802-6475904
FORWARD LENGTH=850
Length=850
Score = 137 bits (74), Expect = 6e-32
Identities = 97/107 (91%), Gaps = 5/107 (5%)
Strand=Plus/Plus
Query 252 GTAACGTCAAGCTTGTGCAACTACTTTAAT-G----TCTCTGCGCAATGGTGTTCATTGG 306
||||| ||||||||||||||| |||||||| | |||||| |||||| ||||||||||
Sbjct 685 GTAACTTCAAGCTTGTGCAACGACTTTAATAGCCTATCTCTGTGCAATGTTGTTCATTGG 744
Query 307 TTGTAATGTTTCTAGTACTCTCTTGATTGATTGTACATTTTCAATGT 353
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 745 TTGTAATGTCTCTAGTACTCTCTTGATTGATTGTACATTTTCAATGT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16688892668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5