BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929466 Length=944 Score E Sequences producing significant alignments: (Bits) Value AT3G16415.1 | Symbols: | pseudogene, similar to myrosinase-bin... 303 1e-81 > AT3G16415.1 | Symbols: | pseudogene, similar to myrosinase-binding protein related protein, blastp match of 48% identity and 5.8e-85 P-value to GP|1655830|gb|AAC08051.1||U59446 myrosinase-binding protein related protein {Brassica napus} | chr3:5575407-5577101 FORWARD LENGTH=1695 Length=1695 Score = 303 bits (164), Expect = 1e-81 Identities = 233/266 (88%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 669 GGAGGGATGTTACGAT-AATGTCTTTGGAATTGAAGCCGAGTTGGTGACGATGCTTAGAT 727 ||||||| |||||||| ||| | |||||| | |||| ||||||||||||||||||||| | Sbjct 1422 GGAGGGAAGTTACGATAAAT-TATTTGGAGTGGAAGGCGAGTTGGTGACGATGCTTAGGT 1480 Query 728 TTATGACAAATAAACGTACATCTCCACCGTTTGGGCTCGATGCAGGCACACCGTTTACGT 787 | | |||||| || ||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 1481 TCAAGACAAACAAGCGTACCTCTCCACCGTTTGGGCTCGATGCAGGCACAACGTTTGCGT 1540 Query 788 TGGAGATGAAAGACCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC 847 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1541 TGGAGATGAAAGATCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC 1600 Query 848 AAGTTGGTGTCTACGTCTCGCCAA-TCTC-AAGTCTTAAACCTTTGAGAGCTCTCTCTAG 905 |||||||| || ||||| | |||| || | |||||||||| ||||| ||||| ||||| Sbjct 1601 AAGTTGGTATCCACGTCAC-CCAAATCACCAAGTCTTAAAGCTTTGTGAGCTTTCTCTTC 1659 Query 906 GCTTACTAAAATAAAATGAAAAAGCC 931 || ||| |||||||| |||||||| Sbjct 1660 TATTCCTAGAATAAAATTAAAAAGCC 1685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46165181093 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5