BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929466

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16415.1 | Symbols:  | pseudogene, similar to myrosinase-bin...   303    1e-81


> AT3G16415.1 | Symbols:  | pseudogene, similar to myrosinase-binding 
protein related protein, blastp match of 48% identity 
and 5.8e-85 P-value to GP|1655830|gb|AAC08051.1||U59446 myrosinase-binding 
protein related protein {Brassica napus} | chr3:5575407-5577101 
FORWARD LENGTH=1695
Length=1695

 Score =  303 bits (164),  Expect = 1e-81
 Identities = 233/266 (88%), Gaps = 5/266 (2%)
 Strand=Plus/Plus

Query  669   GGAGGGATGTTACGAT-AATGTCTTTGGAATTGAAGCCGAGTTGGTGACGATGCTTAGAT  727
             ||||||| |||||||| ||| | |||||| | |||| ||||||||||||||||||||| |
Sbjct  1422  GGAGGGAAGTTACGATAAAT-TATTTGGAGTGGAAGGCGAGTTGGTGACGATGCTTAGGT  1480

Query  728   TTATGACAAATAAACGTACATCTCCACCGTTTGGGCTCGATGCAGGCACACCGTTTACGT  787
             | | |||||| || ||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct  1481  TCAAGACAAACAAGCGTACCTCTCCACCGTTTGGGCTCGATGCAGGCACAACGTTTGCGT  1540

Query  788   TGGAGATGAAAGACCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC  847
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1541  TGGAGATGAAAGATCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC  1600

Query  848   AAGTTGGTGTCTACGTCTCGCCAA-TCTC-AAGTCTTAAACCTTTGAGAGCTCTCTCTAG  905
             |||||||| || ||||| | |||| || | |||||||||| ||||| ||||| |||||  
Sbjct  1601  AAGTTGGTATCCACGTCAC-CCAAATCACCAAGTCTTAAAGCTTTGTGAGCTTTCTCTTC  1659

Query  906   GCTTACTAAAATAAAATGAAAAAGCC  931
               || ||| |||||||| ||||||||
Sbjct  1660  TATTCCTAGAATAAAATTAAAAAGCC  1685



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46165181093


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5