BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929484
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 512 3e-144
AT3G51171.1 | Symbols: | F-box and associated interaction doma... 497 7e-140
> AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542
FORWARD LENGTH=1050
Length=1050
Score = 512 bits (277), Expect = 3e-144
Identities = 507/615 (82%), Gaps = 27/615 (4%)
Strand=Plus/Plus
Query 460 GTTGCGATATACGATTGTACCTCTCAAGCGTTCAAGTTTATTGATACACCTAACGAGGAC 519
|||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||| ||| |
Sbjct 454 GTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTTTATTGATACTTCTAACAAGGTC 513
Query 520 TGGTCCATAACCGATGTTCAACGATCCAGTGTGTCCTTGAACGGAAATCTCTATTGGATT 579
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 514 TGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTTGAACGGAAATCTCTATTGG--- 570
Query 580 TCTCCTATTCCCGTCAAATTTGATTTTTGTGAATTTCTCATCCGAAGCTTTGATTTCTCG 639
|| || | | ||||| ||| |||| ||||| | ||||||||||||||
Sbjct 571 ----CT-TT--C-T----TTTGA------TGACTTTCGCATCCTATGCTTTGATTTCTCG 612
Query 640 AGGGATATATTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGATGGATTTTTGCGATTTA 699
||||| ||| |||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 613 AGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGTTTGATAAATGCGATTTA 672
Query 700 CTTGTCCTCCAAGTTTTCAATGAAAATAGGTTATCCTTGTTAAAGCAATGTTATAAGACA 759
|||| ||||||||||||||| | | ||||||||||||||||||| ||||||| |||||||
Sbjct 673 CTTGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAATCAATGTTGTAAGACA 732
Query 760 AGGAAGGTTGAGATTTGGGTTACGAAGAAGGAGATTGATTCTAGTAACTACAACAG-TGG 818
|||| | ||||||||||||||||||||||| ||||||||||||||||| |||| | |
Sbjct 733 AGGACGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAGTAACAACAATGGATCA 792
Query 819 GGAGGAAGTTGTGTGGATTAGCTTGTTGACTTTTCCATCAAGTAACTTGCCAAACCTATG 878
| | ||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||
Sbjct 793 G-ACGAAGTTGTGTGGATTAGCTTGTTGACTTTGCCACCAAATAACTTGCCAAACTTATT 851
Query 879 TAATAAGCGTTACGACATTAGTTACTTCATCTATGACAAGACCACCCTAATCATGTGTTG 938
|| | | |||| | ||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 852 TATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTAATCATTTATTG 911
Query 939 TGGTGACGATGGAGG-TGGAACCCCTTGCATCTATATTGTCAGGGGAGATTTCTTCAAGA 997
|| ||||| | | | | | ||||||||||||| ||||||| ||||| |||||||
Sbjct 912 TGAAGACGA-GAACACTTCAGCGGCTTGCATCTATATCATCAGGGGGGATTTGTTCAAGA 970
Query 998 AGATTCAAATTAACTC-TGGGGTTTTCCGGTGTTGTCACTGTATTTATGCTCCCAATTTC 1056
|| || ||||| | || | | ||| | |||| ||||||| ||||||||||||||||
Sbjct 971 AGTTTGAAATTGATTCCTCTGCTTT-CTTTTGTTATCACTGTGTTTATGCTCCCAATTTT 1029
Query 1057 ATCCCGGTTCCTTTA 1071
||||| ||||||||
Sbjct 1030 ATCCCTCTTCCTTTA 1044
> AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19010805-19012008 FORWARD LENGTH=1204
Length=1204
Score = 497 bits (269), Expect = 7e-140
Identities = 512/624 (82%), Gaps = 38/624 (6%)
Strand=Plus/Plus
Query 460 GTTGCGATATACGATTGTACCTCTCAAGCGTTCAAGTTTATTGATACACCTAACGAGGAC 519
|||||||| ||||| ||| ||||||| ||||||||||||||||| | | | ||| |||||
Sbjct 568 GTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGAC 627
Query 520 TGG-TCCATAACCGATGTTCA-ACGATCCAGTGTGTCCTTGAACGGAAATCTCTATTGGA 577
||| ||| ||||||||||| | ||||| ||||||||| |||||||||||||||||||||
Sbjct 628 TGGTTCC-TAACCGATGTT-ACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685
Query 578 TTTCTCCTATTCCCGTCAA-ATTTGATTTTTGTGAATTTCTCATCCGAA-GCTTTGATTT 635
||||||||||| || ||| | ||| ||| |||||||||| || | ||||||||
Sbjct 686 TTTCTCCTATT-CC--CAACA-CTGA------TGACTTTCTCATCC-AATGTTTTGATTT 734
Query 636 CTCGAGGGATATATTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGATGGAT-TTTTGCG 694
||| ||||| |||| ||||||||||||||| ||||| ||||||||| | ||| ||| ||
Sbjct 735 CTCTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAGTTTGATGCTTT-CG 793
Query 695 ATTTACTTGTCCTCCAAGTTTTCAATGAAAATAGGTTATCCTTGTTAAAGCAATGTTATA 754
||||||||| | ||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 794 ATTTACTTG---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTATA 848
Query 755 AGACAAGGAAGGTTGAGATTTGGGTTACGAAGAAGGAGATTGATTCTAGTAACTACAACA 814
|||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 849 AGACAAGGAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATG 908
Query 815 G-TGGGGAGGAAGTTGTGTGGATT-AGCTTGTTGACTTTTCCATCAAGTAACTTGCCAAA 872
| | | | ||||||||||||||| | ||||||||| || | | ||| ||||||||||||
Sbjct 909 GATCAG-ACGAAGTTGTGTGGATTCA-CTTGTTGACGTTGCTACCAAATAACTTGCCAAA 966
Query 873 CCTATGTAATA-AGCGTTACGACATTAGTTACTTCATCTATGACAAGACCACCCTAATCA 931
| ||| || | || |||| | ||||||||||||||||||||||||||||||| | ||||
Sbjct 967 CTTATTTA-TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCA 1025
Query 932 TGTGTTGTGGTGACGATGGAGG-TGGAACCC-CTTGCATCTATATTGTCAGGGGAGATTT 989
| | ||||| |||||| | | | | | ||||||||||||||||||||||||||||
Sbjct 1026 TTTATTGTGCTGACGA-GAACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTT 1083
Query 990 -CTTCAAGAAGATTCAAATTAACTCTGGGGTTTTCCGGTGTTGTCA-CTGTATTTATGCT 1047
|| ||||||| || |||| || | ||||||| | |||| | | |||| ||||||||
Sbjct 1084 GCT-CAAGAAGTTTGTAATTGACACCATGGTTTTCTGTTGTTAT-AGCTGTGTTTATGCT 1141
Query 1048 CCCAATTTCATCCCGGTTCCTTTA 1071
|||||||| ||||| ||||||||
Sbjct 1142 CCCAATTTTATCCCCCTTCCTTTA 1165
Score = 348 bits (188), Expect = 8e-95
Identities = 299/350 (85%), Gaps = 17/350 (5%)
Strand=Plus/Plus
Query 4 aaaaaaGAAACAGAGCTAATGGTTCCGCTTCCACGGGAGCTAGAGGAAGATATACTCTCT 63
|||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 34 AAAAAATAACCAGAGGTAATGGTTCCGCTTCCATGGGAGCTAGAGGAAGATATACTGTCT 93
Query 64 CGGCTTCCAGCTCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGTTGGAATGCTCTT 123
|| ||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 94 CGACTTGCAGCCCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGATGGAATTATCTT 153
Query 124 TTCTATGAAAAGGGTTTCATCAACCACCACTTTGCTCGCGCTCGTCCTCAGTTCATCTGC 183
||| |||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| |
Sbjct 154 TTCGATGAAAAGAGTTTCATCAAAAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTC 213
Query 184 ATGACCAATTCCAATATTTATTCGATAGATATCATCGGTCTCGACGGCGTAGATCCTACG 243
|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 214 ATGACCGATTCCAATATTTATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACG 273
Query 244 ATTAATTTGCTTGAT-CT-GCCT--TCTAA-A-CC-TTAC--T-ACCGGAAATTGGATTT 293
||||| || | || | || | || ||| | || |||| | || ||||||| | ||
Sbjct 274 ATTAAGTTACGTG-TGCTAGACTCCTCTGGTATCCCTTACCGTGACTGGAAATTTGCTT- 331
Query 294 TAACTGCATAAGCATCACTACTTGCGATGGGTTCTTGTTTTGTAACTCTT 343
| | |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 332 -A-C---ATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTT 376
Score = 86.1 bits (46), Expect = 7e-16
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 382 AAGGGGACAGCGCTCTGGAATCCGTGGTTGAAACAGGTTAAATGGAACGATTTTGAGGAT 441
||||||||||| | ||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 388 AAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGAT 447
Query 442 AAAGATTTTGATGCCTGTG 460
|||| ||| ||| |||||
Sbjct 448 AAAGGTTTCAATGTCTGTG 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55572003315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5