BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929488

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16570.1 | Symbols: RALF23, ATRALF23 | rapid alkalinization ...   651    0.0  


> AT3G16570.1 | Symbols: RALF23, ATRALF23 | rapid alkalinization 
factor 23 | chr3:5644698-5645414 FORWARD LENGTH=717
Length=717

 Score =  651 bits (352),  Expect = 0.0
 Identities = 421/453 (93%), Gaps = 9/453 (2%)
 Strand=Plus/Plus

Query  1    GCTACAGTCTACAGAA-AACAATGAGAGGACTCTCCAGAAACTCCGGCGCGGCGGCGATA  59
            |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  31   GCTACAGTGTACAGAAGAA-AATGAGAGGACTCTCCAGAAACTCCGGCGCGGCGGCGATA  89

Query  60   TTCGCGATTCTAGTAATCCTCGCCGTTCAAT-TCTGGTCTGTCACCGTATCTTCTCAATC  118
            |||||||||||| | || |||||||||| ||  |||||| ||| ||||||||||||||||
Sbjct  90   TTCGCGATTCTACTCATTCTCGCCGTTC-ATAACTGGTCCGTCGCCGTATCTTCTCAATC  148

Query  119  CATCGAATTCGCCGGAGATTTCCCTCCTTTCGAAACAGAGTGCCGCGGTACAATTGCCGA  178
            || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  149  CACCGAATTCGCCGGAGATTTCCCTCCATTCGAAACAGAGTGCCGCGGTACAATTGCCGA  208

Query  179  GTGCTCAGTATCCGCCGCTCTAGGCGA-GGACGGAGATCTATTCTACGGCGGAGGAGAAA  237
            |||||| || |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct  209  GTGCTCTGTTTCCGCCGCCCTCGGAGACGGA-GGAGATCTATTCTACGGCGGAGGAGAAA  267

Query  238  TGGGAGAGGAGTTCGAGATGGAATCAGAGATCAACCGGCGCATATTAGCGACGAGGAGGT  297
            |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  268  TGGGAGAGGAGTTCGAGATGGACTCAGAGATCAACCGGCGCATATTAGCTACGAGGAGGT  327

Query  298  ACATCAGCTATGGTGCGCTGAGAAGAAACACTGTTCCGTGCTCACGTCGCGGCGCATCTT  357
            |||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||
Sbjct  328  ACATCAGCTATGGTGCGCTGAGGAGAAACACAATTCCGTGCTCACGTCGCGGCGCATCTT  387

Query  358  ACTACAATTGTCGACGTGGCGCTCAGGCCAATCCTTACTCTCGCGGTTGCAGCACCATCA  417
            ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct  388  ACTACAATTGTCGACGTGGCGCTCAGGCCAATCCTTACTCTCGTGGCTGCAGCGCCATCA  447

Query  418  CTCGCTGCCGGCGCT---GAATCTGTCACTGTC  447
            |||||||||||||||   |||||| ||||||||
Sbjct  448  CTCGCTGCCGGCGCTCATGAATCTATCACTGTC  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5