BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929490

Length=1207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47390.1 | Symbols:  | F-box and associated interaction doma...   200    3e-50


> AT1G47390.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:17379544-17380656 FORWARD LENGTH=1113
Length=1113

 Score =  200 bits (108),  Expect = 3e-50
 Identities = 293/375 (78%), Gaps = 41/375 (11%)
 Strand=Plus/Plus

Query  802   TTTTTAGGGGAGACCGGTTTTCGGTGTTAGATCAATGCAATGAAACAAAGAAGATTGAGA  861
             ||||||||| ||| ||| ||||| ||||| | |||||| ||  |||||||||||||||||
Sbjct  734   TTTTTAGGGAAGATCGGCTTTCGTTGTTAAAGCAATGCCATCTAACAAAGAAGATTGAGA  793

Query  862   TTTGGGTGACCAAGAACAAGATTA----CT-C----G-GGA--TG-GGAAAGATGTGGAA  908
             ||||||||||||||||||||||||    || |    | |||  || |||   | | ||||
Sbjct  794   TTTGGGTGACCAAGAACAAGATTAGAAACTGCTCTAGTGGAGATGTGGATTCA-GCGGAA  852

Query  909   TGGATGAAGTTT-ATGGAAATGTCATGTCCTAACTTGCCTGATTTAGTACAGTCCCGACC  967
             |||||||| ||| |||||| |||||  || ||||||||| | |||  ||  ||    || 
Sbjct  853   TGGATGAA-TTTCATGGAAGTGTCAACTCTTAACTTGCCGG-TTT--TA--GT----AC-  901

Query  968   CTACTCTCGGCCAAGTTACTTCATCGAAGATAAAACGCTCATCGTGTGTTCTTGTGAC-A  1026
               || | |    ||||||||||||||| ||||||| |||| | ||||||||||| ||| |
Sbjct  902   --AC-C-C----AAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGCGACCA  953

Query  1027  AAGCTGGACAGGCTTGGATCTATGTTGTAAGGGAAAATAAGCTGA---GTACAATTCGAA  1083
             || |||| || |||||||||||||||||  |||| |||||| |||   ||| ||||| ||
Sbjct  954   AA-CTGGCCAAGCTTGGATCTATGTTGTGGGGGACAATAAGTTGATCAGTAAAATTCAAA  1012

Query  1084  TAGATTATGTGGTTGATCCTTGGCCTTCGCATTGTACCTGTTTTCCC-AGTTTGGTCCCG  1142
             |||||| |||||||| ||| ||||||| |||||||| || ||||||| ||||||||| | 
Sbjct  1013  TAGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCT-TTTTCCCCAGTTTGGTCTCA  1071

Query  1143  GTTCCTCGAGGTCAA  1157
              | |||||| |||||
Sbjct  1072  ATACCTCGAAGTCAA  1086



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59286843645


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5