BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929506
Length=2093
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC c... 3391 0.0
> AT3G16730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC
condensin II complex, subunit H2-like (InterPro:IPR009378);
Has 249 Blast hits to 211 proteins in 82 species: Archae -
0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses
- 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695410-5699167
REVERSE LENGTH=2579
Length=2579
Score = 3391 bits (1836), Expect = 0.0
Identities = 2009/2094 (96%), Gaps = 6/2094 (0%)
Strand=Plus/Plus
Query 1 TTCCGTGAGCCTCCACCGAGAATGACGAGTCACGGTGGCGGTGG-AGTCCGCGGCGAGAG 59
||||||||| || ||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 284 TTCCGTGAGTCTTCACCGAGAATGACCAGTCACGGTGGCGG-GGAAGTCCGCGGCGAGAG 342
Query 60 GATTCATACAGTACAGCCGGAGAGAGATTTGGTGGCTAATTGGGAAGTTGATTTGTCGGA 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 343 GATTCATACAGTACAGCCGGAGAGGGATTTGGTGGCTAATTGGGAAGTTGATTTGTCGGA 402
Query 120 GAAGCTAGAAGAGTACCTCCTCAAAATTTGTTCCGGAGAAATCACTGGGAATGAAGAAGA 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 403 GAAGCTAGAAGAGTACCTCCTCAAAATTTGTTCCGGAGAAATCACTGGAAATGAAGAAGA 462
Query 180 TGAGCAAATTCCTGTGAATTTCGCTGAAGCTGCTTTGCTGCTTCAGGGTTCGGTTCAGGT 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TGGGCAAATTCCTGTGAATTTCGCTGAAGCTGCTTTGCTGCTTCAGGGTTCGGTTCAGGT 522
Query 240 TTACAGCAAGAAAGTTGAGTACTTGTACAATTTAGTTCTACGTACGTTGGAGTTTCTATC 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 523 TTACAGCAAGAAAGTTGAGTACTTGTATAATTTAGTTCTACGTACGTTGGAGTTTCTATC 582
Query 300 GAAGCAAAGAGACCAGGAACAGTCCAAAGGTACATCAAACGAGGCTGAGGCAAGCTCCTC 359
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 583 GAAGCAAAGAGACCAGGAACAGTCTAAAGGTACATCAAATGAGAATGAGGCAAGCTCCTC 642
Query 360 ACGTCAGGTTGATGAAGAAGAAAATGATCTCTTCTGGAATGTAGATGACATCCCAGTGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACGTCAGGTTGATGAAGAAGAAAATGATCTCTTCTGGAATGTAGATGACATCCCAGTGGA 702
Query 420 CACAAAGAATAGATTGGACAGTTCGGTTGGCGGAGATACCTGCCCAAGTCAATTTGTTAA 479
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 703 CACAAAGAATAGATTGGACAGTTCGGTTGGCGGAGATACTTGTCCAAGTCAATTTGTCAA 762
Query 480 GCCTCCGGCAAATCTAGTTGTTCTTGAAGGTGACTGTTTAGATACTAGTGGTGACGGAGG 539
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 763 GCCTCCAGCGAATCTAGTTGTTCTTGAAGGTGACTGTTTGGATACTAGTGGTGACGGAGG 822
Query 540 AGAATTGGAATCCTATCTGTTGGCAACTACACATCTCTACCGGGATTTTATTCTATTAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 823 AGAATTGGAATCCTATCTGTTGGCAACTACACATCTCTACCGGGATTTTATACTATTAGA 882
Query 600 TCCATGTGATGCTGTAGCGGTGAATGAATTCTTAGGTGATGACTATGCTGGTAAAGGAAA 659
||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 883 CCCATGTGATGCTGTAGCGGTGAATGAATTTTTAGGTGATAACTATGGTGGTAAAGGAAG 942
Query 660 GAACAATGCTCACAGAGGTAGCTCAGTTCGTAAAAGTTTTCACTCATCTGTGGGACGTTC 719
||||| ||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 943 GAACAGTGCCCACAGAGGCAGCTCAGTTCGTAAAAGCTTTCACTCATCTGTTGGACGTTC 1002
Query 720 TGGAGGTAGTGCTCGTAAGTCATCTGTGGGAAAGAATCAGGGCACCAATGTCAACTTGTC 779
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1003 TGGAGGAAGTGCTCGTAAGTCATCTGTGGGAAAGAATCAGGGCACCAATGTCCACTTGTC 1062
Query 780 CCCAATATGTGGGAATGGTCCCAATGTTCAAAATTGTGACCAAGGGTCTCAGCCTCCTGT 839
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1063 CCCAATATGTGGGAATGGTCCCAATGATCAAAATTGTGACCAAGGGTCTCAGCCTCCTGT 1122
Query 840 TTTTGGAGACAATGATCATGGTTTTGACATGGATAATGAATATGGAGGAACCATGGATTT 899
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1123 TTTTGAAGACAATGATCATGGTTTTGACATGGATAATGAATATGGAGGAGCCATGGATTT 1182
Query 900 TAGTGATACAGATGCTGATGAAGATGATCCGTGGAAGCCATTGAATCCCTATGAACCAGG 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TAGTGATACAGATGCTGACGAAGATGATCCGTGGAAGCCATTGAATCCCTATGAACCAGG 1242
Query 960 GAAGTTGAAAGTGAAGCCTTTCaaaaaagtaaaaaatttcaaaaaGATTGGCTGGAGCAT 1019
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1243 GAAGTTGAAAGTGAAGCCTTTCAAAAAAGTAAAAATTTTAAAAAAGATTGGATGGAGCAT 1302
Query 1020 TACCAAGGACCATATGACTTCCATGTTCCCTCTCGCTAGACCAGACGGTCCCATCAGTTC 1079
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1303 TACCAAGGACCATATGACTTCCATGTTCCCTCTCGCTAGACCAAACGGTCCCATCAGTTC 1362
Query 1080 GGAGCTTATTGGAATTTGGAAGATACACGTTTGTGCTAGTAAAGGCGAGCAAGAATCACA 1139
|||||||||| ||||||||| || |||| |||||||||||||| |||||||| ||||||
Sbjct 1363 AGAGCTTATTGAAATTTGGAAAATGCACGGTTGTGCTAGTAAAGACGAGCAAGCATCACA 1422
Query 1140 AGACATTCCC-TATTACGAGAAGCTTCGAGAGATGCTTGTGAATGGAGGAAACCAACCTT 1198
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 AGACA-TCCCTTATTACGAGAAGCTTCGAGAGATGCTTGTGAATGGAGGAAACCAACCTT 1481
Query 1199 GTGGTGCTAACGGCAATTACAAGGACAATGATAAGGATAACCATGAGGAAGCCAATAATG 1258
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1482 GTGGTGCTAACGGCAATTACAATGACAATGACAAGGATAACCATGATGAAGCCAATAATG 1541
Query 1259 GCGACTTCCATGATTGTGGAGAGCATGATGGTGATGATGCAGAACATCCCTTCATGGATG 1318
||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1542 GCGACTTCCATGATTTTGGGGAGCATGATGGTGATGATGCAGAACATCCGTTCATGGATG 1601
Query 1319 AAGATGTTCTCAATATGAATGATGGTGGAGCTGCTGAGTTTCACAACTATGATGGATTTG 1378
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1602 AAGATGTTCTCAATATGAATGATGGTGGAGCTGCCGAGTTTCACAACTACGATGGATTTG 1661
Query 1379 AAAACGGCGAATCAAATTGTCAAGAAAGCTTGGAAGATCTCTGCCGCTCACACCTGGATG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AAAACGGCGAATCAAATTGTCAAGAAAGCTTGGAAGATCTCTGCCGCTCACACCTGGATG 1721
Query 1439 CTCTTCTCGCTAACATAGCTAAAAGTGAGAAGCAAACAGATCTGGCTGCTCGGGTTTCAA 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1722 CTCTTCTCGCTAACATAGCTAAAAGTGAGAAGCAAACAGATCTGGCTGCTCGTGTTTCAA 1781
Query 1499 CGTGGAAACAGAAAATTGAGCAAAACCTAGAAGAACAAGAGCTACACCCTCCTTTTGACA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1782 CGTGGAAACAGAAAATTGAGCAAAACCTAGAAGAACAAGAGCTACACCCTCCTTTCGACA 1841
Query 1559 TTCAAGAATATGGAGAAAGGATTATTAACAAACTGACAGTTGAAGAGAGCGGAAACGTCG 1618
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1842 TTCAAGAATATGGAGATAGGATTATTAACAAACTGACTGTTGAAGAGAGCGGAAACGTCG 1901
Query 1619 AGACCTTTACCGATCTTATGAAAGACCAAGAAAAGCACGAGGTAGCTCGGGCCTTCTCTG 1678
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 AGACCTTTACTGATCTTATGAAAGACCAAGAAAAGCACGAGGTAGCTCGGGCCTTCTCTG 1961
Query 1679 CGCTTCTCCAGTTGGTGAACAATGGAGACGTTGATCTGGAAAAACCTGGGAACTCCACAA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 CGCTTCTCCAGTTGGTGAACAATGGAGACGTTGATCTGGAAAAACCTGGGAACTCCACAA 2021
Query 1739 ACGAACCAATGTGTTATACAGCGGTTAAACCTTTCAGTGTTCGGTTGCTCAAAGATCATA 1798
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2022 ACGAACCAATGTGTTATACAGCGGTTAAACCGTTCAGTGTTCGGTTGCTCAAAGTTCATA 2081
Query 1799 ATAGAAAGAATGAGAAAAGTGCGATGCATTTACCCCAGAAACGAGCTAAGTCTCCAATAA 1858
| || |||||||||||||| | ||| ||||||||||| |||||||||||||| |||||||
Sbjct 2082 ACAGGAAGAATGAGAAAAGAGGGATACATTTACCCCAAAAACGAGCTAAGTCCCCAATAA 2141
Query 1859 CCAAAGGCAAATCTCACGAGTCACCACCACCAAAGAAGCCAAACACATGTTCTGTCTCAA 1918
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2142 CCAAAGGCAAATCTCACGAGTCACCACCACCTAAGAAGCGAAACACATGTTCTGTCTCAA 2201
Query 1919 GCCAGACTCGGAAAGTCTCGCTAAAGATCTCAAAGATCAACAGTGTTGGCACGAGATGCA 1978
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 2202 GCCAGACTCGGAAAGTCTCGCTAAAGATCTCAAAGATCAACGGTGTTGGTGTAAGATGCA 2261
Query 1979 CACCAAACAGTAAGAAGAGACG-AAAGGGTCGATCTGAAGATGTAGCTGAGGTAACTGAA 2037
|||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||
Sbjct 2262 CACCAAACAGTAAGAAGAGACGGAAAGG-TCGATCTGACGATGTAACTGAGGTAACTGAA 2320
Query 2038 GTTTCTTCAATCGGAAAGTCTTTGGGGAAATTGTGACTACTCAAATTAGATTGT 2091
||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2321 GTTGCTTCAATCGAAAAATCTTTGGGGAAATTGTGACTACTCAAATTAGATTGT 2374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103764526515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5