BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929508
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1070 0.0
> AT3G16760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5703013-5705313 FORWARD LENGTH=1861
Length=1861
Score = 1070 bits (579), Expect = 0.0
Identities = 621/642 (97%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 826 GCTTCGAAATCAAACACATTCTCATCAGGCGGTAGCTTCAATGCTTCAAACGTTGGTTTT 885
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1008 GCTTCGAAATCAAACACATTCTCATCAGGAGGTAGCTTCAATGCTTCAAACGTTGATTTT 1067
Query 886 GGTGTGCTACCAAGTGGTCCACAATCTTCAAGTGCAAACGATGATCCATTAGGAATGTTC 945
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1068 GGTGTGCAACCAAGTGGTCCACAATCTTCGAGTGCAAACGATGATCCATTAGGAATGTTC 1127
Query 946 TCTAGTTCCAAACCCACAGCTGCAGCGGCTACACCACAGACTGAAGATTGGGGATTTGAA 1005
|||| |||||||||| |||||||| | |||| |||||||| ||||||||||||||||||
Sbjct 1128 TCTAATTCCAAACCCTCAGCTGCACCACCTACGCCACAGACCGAAGATTGGGGATTTGAA 1187
Query 1006 AGTTTTGACGGTGGGGCTGGTTCCACCACCGAGCTTGATGGTTTGCCACCACCTCCACCG 1065
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1188 AGTTTTGACGGTGGGGCTGGTTCCACCACCGAGCTTGATGGTTTGCCACCGCCTCCACCG 1247
Query 1066 GGTGTATCAGCTACATCAGCTAAGAGCAAGGGCATTGATAACCAGAGACAAGGTCAGTAT 1125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1248 GGTGTATCAGCTACATCAGCTAAGAACAAGGGCATTGATAACCAGAGACAAGGTCAGTAT 1307
Query 1126 GCTGATGCCATAAAGTGGCTCTCTTGGGCTGTGATTCTTATGGATAGAGCTGGCGATGAA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1308 GCTGATGCCATAAAGTGGCTCTCTTGGGCTGTGATTCTTATGGATAGAGCTGGTGATGAA 1367
Query 1186 GCTGGATCAGCCGAGGTTCTTTCAACAAGGGCTTCGTGTTACAAAGAAGTTGGAGAGTAT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GCTGGATCAGCCGAGGTTCTTTCAACAAGGGCTTCGTGTTACAAAGAAGTTGGAGAGTAT 1427
Query 1246 AAGAAGGCTGTAGCCGACTGCACAAAGGTACTTGATCACGACAAGAAGAATGTGACCATT 1305
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AAGAAAGCTGTAGCCGACTGCACAAAGGTACTTGATCACGACAAGAAGAATGTGACCATT 1487
Query 1306 CTGGTTCAACGAGCACTTTTATACGAGAGCATGGAGAAATACAAACTCGGAGCTGAAGAC 1365
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CTGGTTCAACGAGCACTGTTATACGAGAGCATGGAGAAATACAAACTCGGAGCTGAAGAC 1547
Query 1366 CTAAGGATGGTTCTAAAGATCGATCCCGGGAATAGAATTGCTAGAAGCACCGTTCACCGC 1425
|||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||
Sbjct 1548 CTAAGGATGGTTCTAAAGATTGATCCCGGGAATAGAATCGCTAGAAGTACTGTTCACCGC 1607
Query 1426 CTAACCAAAATGGCTGGTTGATCCTTCATATATACCGATACT 1467
||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1608 CTAACCAAAATGGCTGGTTGATCCTTCATATATACGGATACT 1649
Score = 1037 bits (561), Expect = 0.0
Identities = 737/815 (90%), Gaps = 40/815 (5%)
Strand=Plus/Plus
Query 10 TGAGGA-GAAATCATGAATTCGAACTTCGGGAAGAGATCATCGGGACCGATCAATAGCTT 68
|||||| ||||||||||||| |||||||||||||||||||| ||| ||| |||||||||
Sbjct 188 TGAGGATAAAATCATGAATTCCAACTTCGGGAAGAGATCATCCGGATCGACCAATAGCTT 247
Query 69 CGATTTCGATCTGGGACTCGGATCGAGCCAAGGTAGACCTCTTAATGGTCAGAAGAGCCA 128
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 248 TGATTTCGATCTGGGGCTTGGATCGAGCCAAGGTAGACCTCTGAATGGTCAGAAGAGCCA 307
Query 129 AACATCTTCCTATTCAAGCTCGAATTCGCAGCCGAGACCTGCGTGGCAGCCTGGTAAGCC 188
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AACATCTTCTTATTCGAGCTCGAATTCGCAGCCGAGACCTGCGTGGCAGCCTGGTAAGCC 367
Query 189 GTCGTGGACGCATCAACCTGCACCGAAGCAGAGTACGATTCGATCTGAGATCGGAAGTGG 248
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 368 GTCGTGGACGCATCAACCTGCACCGAAGCAGAGTACGATCCGATCTGAGATCGGAAGTGG 427
Query 249 ACCGACTTCAATGGTGGGTGATATTCATGGTAAGACTTGGGGTTCAGCTTCGGGATCGGA 308
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 428 ACCGACTTCAATGGTGGGTGATATTCATGGTAAGACGTGGGGGTCAGCTTCGGGATCGGG 487
Query 309 TTCGGGGATTGGGATTGTGAATAAGGATCCTAGCTTGTTTGGAGATCTGGTGGGTTCTGC 368
|||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 488 TTCGGGTATTGGGATTGTGAATAAGGATCCTAGTTTGTTTGGAGATTTGGTTGGTTCTGC 547
Query 369 GATAGGTCAAGGTAAATCTAGTAGAAACGTGCCGTTGAAGAATGCACCGCCTGTTTCGGC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GATAGGTCAAGGTAAATCTAGTAGAAACGTGCCGTTGAAGAATGCACCGCCTGTTTCGGC 607
Query 429 TTCAGGTTCTAGTAAGAGTCCTTATTCTATGGGGAATTTTGCTGATTCGTTGCCCAAATC 488
||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 608 TTCAGGTTCGAGTAAGAGTCCTTATTCTATGGGGAATTTGGGTGATTCGTTGCCTAAATC 667
Query 489 TGGTAATTCTATGAAAACTGGTGGTGGTATGGGTTATAGCAGTAATCCGAGTGGTTTTTC 548
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TGGTAATTCGATGAAAACTGGTGGTGGTATGGGTTATAGCAGTAATCCGAGTGGTTTTTC 727
Query 549 TGGTGGTTACACGATCTCCGGTGGTATGAATTCTGGTGTTAATGCTAATAGTAGTCCAAA 608
|||||||||||||| |||||||||| | || ||||||||| |
Sbjct 728 TGGTGGTTACACGAGCTCCGGTGGT-T---TT--------AATGCTAAT------C---- 765
Query 609 TCTTGGAGGTCCTTCAATGAAAAATATGTCTGGGGGTAATCTAAGTGGGTCTGGTCTTCC 668
| | |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 766 T-T-GGAGGTCCTTCAATGAAAAATATGGCTGGGGGCAATCTAAATGGGTCTGGTCTTCC 823
Query 669 TTCGAACAGCGATCCTTTTGGTTCTTTGGTTGGTTTCGGATCAAAATCATCAGGAAGCAT 728
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCGAATAGTGATCCATTTGGTTCTTTGGTTGGTTTCGGATCAAAATCATCAGGAAGCA- 882
Query 729 CAATTCTGGAATCAAAACAGGAAAGGTTAACAACAATGCACAGAGTGCTGCTTTTGGGAA 788
|| | || ||||||||||||||||||||||||| || | ||||||||||
Sbjct 883 -AA--C------CA-----GGAAAGGTTAACAACAATGCACAGAATGATACTTTTGGGAA 928
Query 789 TTTTCAAGGAGAGTCAAACCTTAACGGTAGCGGTT 823
||||||||||| ||| ||||||||| || ||||||
Sbjct 929 TTTTCAAGGAGTGTCGAACCTTAACAGTGGCGGTT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5