BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929515
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18120.1 | Symbols: | F-box associated ubiquitination effec... 213 3e-54
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 111 9e-24
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 93.5 3e-18
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 93.5 3e-18
AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 75.0 1e-12
AT2G18780.1 | Symbols: | F-box and associated interaction doma... 65.8 7e-10
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 62.1 1e-08
> AT3G18120.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:6210090-6210572 REVERSE LENGTH=483
Length=483
Score = 213 bits (115), Expect = 3e-54
Identities = 210/253 (83%), Gaps = 18/253 (7%)
Strand=Plus/Plus
Query 683 TGAAGATACCGTGACTCTATCTAGTGTTAGAGATGAGCAACTTGCAGTGTTATTTCACCG 742
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 177 TGAAGATACTGTGACTCTATCTAGTGTTAGAGATGAGCAACTTACAGTGTTATTTGAGAG 236
Query 743 ACG-TGATTCATTACATATGGAGATATGGATTACGACTGAGATTGAGCCC-AAAGAGGTG 800
| | |||| ||||||| ||||||||||||||||||||| ||||||||||| ||| || |
Sbjct 237 A-GATGATACATTACAGATGGAGATATGGATTACGACTAAGATTGAGCCCGAAACAGC-G 294
Query 801 TGGTGGGGGAGCAAGTTGTTCTTAACGGTGAATATA-AATCCACTTACTTGTTAT-CAAT 858
| |||| ||||||||||||||| ||||| ||| || ||||| ||| ||| | || |
Sbjct 295 TCGTGG---AGCAAGTTGTTCTTAGCGGTGGGTATGGAA-CCACTAACTGGTT-TGCAGT 349
Query 859 TCCCAT-TTGAACG-TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCG-CAGTGATTT 915
| | | ||| || ||||| ||||||||||||||||||||||||||| | | ||| |||
Sbjct 350 TTC-AGGTTGC-CGCTGGGAATTTCTTTGTTGACGAGGAGAAGAAAGTTGTC-GTG-TTT 405
Query 916 TTGGTTAGAGACA 928
|||| || |||||
Sbjct 406 TTGGATAAAGACA 418
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 572 ACGTGGCGTGTCTCTCAAGGGAAATACT 599
||||||||||||||||||||||||||||
Sbjct 57 ACGTGGCGTGTCTCTCAAGGGAAATACT 84
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 111 bits (60), Expect = 9e-24
Identities = 199/263 (76%), Gaps = 22/263 (8%)
Strand=Plus/Plus
Query 21 ATGGCGATGTCGGATGTTACACAGGATTTGGTAGAGGATG-TGATCTCGAGAGTTCCGTT 79
||||||||||| ||| || || | |||||||| ||||| | | ||||| || |||||| |
Sbjct 1 ATGGCGATGTCCGATCTTCCAAATGATTTGGTGGAGGA-GATCATCTCTAGGGTTCCGGT 59
Query 80 AACATCTCGT-AGATCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCCAAAAATT 138
|| |||| | ||| |||| | |||||||||||||||||||||||||||||||| ||
Sbjct 60 AAAATCT-ATAAGAGCAGTAAGCTCTACTTGCAAAAACTGGAACACTTTATCCAACGATC 118
Query 139 -TGAGCTTTA-GAAAGATAAAC-CTT-GCTAAAGCAAGAGCAG-AAACGAAGCAA-GAGT 192
| ||||||| || || | | ||| | |||| ||| | || ||| ||| || ||||
Sbjct 119 AT-AGCTTTACGAG-GA-AG-CTCTTTGGTAAAACAATAACAACAAAGGAA--AATGAGT 172
Query 193 -TTCCGGCTA-TCATGAT-ATTGGAGTATAAGGTTTACCTAATGAGCTTTGATCTCCGTG 249
|| || | ||||||| || ||| | ||||||||| |||||||| | |||||| |
Sbjct 173 GTTT-GG-TGGTCATGATGAT-GGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCATA 229
Query 250 GAATTCACAATGACGACGAAGAC 272
|||||||||| || |||| |||
Sbjct 230 GAATTCACAAAGAAAACGACGAC 252
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 93.5 bits (50), Expect = 3e-18
Identities = 98/120 (82%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 494 GTTTGAGATCTACAATCTTGACTCTAACTCATGGAAGATTCTTA-ATGTT-ACTCGCGTC 551
|||||| ||||||||| || ||||| | ||||||||| || ||| || || ||| | | |
Sbjct 546 GTTTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTT-TTATAT-TTCACTTGTGAC 603
Query 552 GGGAAGA-TACC-TTATTATCAACGTGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTG 609
|||| | |||| || || ||||| || |||||||||||||||||||||||||||||||
Sbjct 604 TGGAA-ATTACCGTT-TTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTG 661
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 93.5 bits (50), Expect = 3e-18
Identities = 98/120 (82%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 494 GTTTGAGATCTACAATCTTGACTCTAACTCATGGAAGATTCTTA-ATGTT-ACTCGCGTC 551
|||||| ||||||||| || ||||| | ||||||||| || ||| || || ||| | | |
Sbjct 546 GTTTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTT-TTATAT-TTCACTTGTGAC 603
Query 552 GGGAAGA-TACC-TTATTATCAACGTGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTG 609
|||| | |||| || || ||||| || |||||||||||||||||||||||||||||||
Sbjct 604 TGGAA-ATTACCGTT-TTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTG 661
> AT3G14030.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756
Score = 75.0 bits (40), Expect = 1e-12
Identities = 117/152 (77%), Gaps = 14/152 (9%)
Strand=Plus/Plus
Query 760 TGGAGATATGGATTACGACTGAGATTGAGCCCAAAGAGGTGTGGTGGGGGAGCAAGTTGT 819
||||||| |||||||| || |||| ||||| | | ||||| | |||||| ||| |
Sbjct 434 TGGAGATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGT-CT--TGGAGCATGTT-T 489
Query 820 TCTTAACGGTGAATAT-AAATCCACTTACTTG-TTATCAATTCCCAT-TTGAACG-TGGG 875
| | || ||| |||| | | ||||| ||| | || | || | ||| ||||| | ||||
Sbjct 490 T-TGAA-AGTGGATATGAGA-CCACTCACTGGCTT-T-AAGTGTCATGTTGAA-GCTGGG 543
Query 876 AGTTTCTTTGTTGACGAGGAGAAGAAAGTCGC 907
||||||||||||||||||||||||||||||||
Sbjct 544 AGTTTCTTTGTTGACGAGGAGAAGAAAGTCGC 575
> AT2G18780.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:8136758-8138118 REVERSE LENGTH=1361
Length=1361
Score = 65.8 bits (35), Expect = 7e-10
Identities = 113/147 (77%), Gaps = 19/147 (13%)
Strand=Plus/Plus
Query 763 AGATATGGATTACGACTG--AGATTGAGCCCAAAG-AGGTGTGGTGGGGGAGCAAGTTGT 819
|||||||||||| | | | || |||||||||| | | |||| || ||| ||||||||
Sbjct 877 AGATATGGATTA-G-CAGCAAGGTTGAGCCCAATGCA-GTGTCGT---GGAACAAGTTGT 930
Query 820 TCTTAACGG-TGAATAT-AAATCCACTTACTTGTTA-TCAATTC-C-CATTTGAACGTGG 874
|||||| || || | || ||| || || ||| || | || ||| | ||| | ||||
Sbjct 931 TCTTAAAGGTTG-ACATGAAA-CCTCTCACTGGTAATTC-CTTCTCTTATTCG--GGTGG 985
Query 875 GAGTTTCTTTGTTGACGAGGAGAAGAA 901
|||||||||||||||||||||||||||
Sbjct 986 GAGTTTCTTTGTTGACGAGGAGAAGAA 1012
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 62.1 bits (33), Expect = 1e-08
Identities = 40/43 (93%), Gaps = 1/43 (2%)
Strand=Plus/Plus
Query 574 GTGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGTTCAAAG 616
|||| || |||||||||||||||||||||||||||||| ||||
Sbjct 666 GTGGAGTCTCTCTCAAGGGAAATACTTACTGGTTTGTT-AAAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5