BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929516
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 165 9e-40
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 165 9e-40
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 145 1e-33
AT2G18780.1 | Symbols: | F-box and associated interaction doma... 130 3e-29
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 97.1 3e-19
AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 78.7 1e-13
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 63.9 3e-09
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 165 bits (89), Expect = 9e-40
Identities = 704/983 (72%), Gaps = 114/983 (12%)
Strand=Plus/Plus
Query 21 ATGGCGATGTCGGATCTTACACAG-GATTTGGTAGAAGAGGTGA-TCT-TGAGAGTTCCG 77
||||||||||| ||||| || || |||||| | || ||||| | ||| | || ||||||
Sbjct 1 ATGGCGATGTCCAATCTTCCA-AGAGATTTGTTGGAGGAGGT-ACTCTCT-AGGGTTCCG 57
Query 78 CTAACA-TCTCATA-AAGCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCGAAAA 135
||| | ||| ||| ||||||| |||| ||||| ||||| |||||| ||||| |
Sbjct 58 GTAA-AGTCT-ATAGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTA---ACCT 112
Query 136 AC-TTGATGAGCTTGAAAGGGATAAAC-CT-TGCCAAAGCAAGAGCAGCAACAAA-G--C 189
|| | | |||||| | | | || | || || ||| ||| | |||||||| |
Sbjct 113 ACGGTCA-GAGCTT--CACGAAGAAGCTCTATGGTAAAACAA-TG--GCAACAAAGGAAA 166
Query 190 AGGAGTTTCTGACAATCGTGA-TAATGGATTTTAAGGTTTATCTAATGAGCTTTGATCTC 248
||||||||||| || ||| | |||||||| |||||||| ||||||| | |||||
Sbjct 167 AGGAGTTTCTGGTGGTCATGACT-ATGGATTTGGAGGTTTATTTAATGAGGGTCAATCTC 225
Query 249 CGTGGACTTC--ACA-ATGACAACGACGTGGAATTATCTATAAAGCGAGAAGGTAAACTG 305
| |||| ||| | | |||| ||| | || ||| |||||| | || | ||| ||||||
Sbjct 226 CATGGAATTCATAAAGATGATAACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTC 285
Query 306 ATTAGCCTAAACGAT-A-CAGAG--GGAGTCCG-TG---TATCTAGAGTCTTGCACTGTA 357
||||| ||||| ||| | | ||| |||| || || ||| || |||||| |||||
Sbjct 286 ATTAGGCTAAATGATGATC-GAGTTCGAGT-CGATGATATATGTAAAGTCTTTCACTG-C 342
Query 358 G-CGGTTTGTTGTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGAACCCT 416
| |||||| ||||||||||||| | | | || | |||||||||||||| || |||
Sbjct 343 GACGGTTTATTGTTATGCATCA-C---TATTGGGAT-C-AGGCTTGTGGTTTGTAATCCT 396
Query 417 TGTTCTGGACAAACAAGGTGGATC-GAACCTAGAGGTTCTTACCACA-AAAAGAACAACT 474
| || ||| ||||||||||| ||| |||| ||| | |||||| | || | |||| |
Sbjct 397 TATTGTGGGCAAACAAGGTGTATCAAAACC-AGAAGAGATTACCATATAACCG-ACAATT 454
Query 475 ATGCTCTCGGATAC--G-AGATGAAGAACAAATC-TTGTCG-AAGCTACAAGATTTTGAG 529
| ||||| ||| || | |||||||||||| | | ||| || |||||| || ||| |
Sbjct 455 ACGCTCTTGGACACGAGAAGATGAAGAACAGCCCACT-TCGTAA-CTACAAAATCTTG-G 511
Query 530 ATATTTGGATGCGTATGA-CATTAGTGTAAGGATTCTATATTGTGAGTTTCAAATCTACA 588
| ||| ||| || | | || | || |||| | || |||| |||||||||
Sbjct 512 -TGTTT-CATG-ATA-AATCCTTCCTCCAA-AATTC-----T-TG-GTTTGAAATCTACA 559
Query 589 ATTTTGATTCTAACTCATGGAAGGCTGTT-CAGGCCACTCCTCG-CTGG-AATATA-CAT 644
||||| | ||| | |||||||||| | || | |||| | | |||| ||| || | |
Sbjct 560 ATTTTAACTCTGATTCATGGAAGG-TTTTATATTTCACTTGT-GACTGGAAAT-TACCGT 616
Query 645 TATTATCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC-A-A-A-G--- 697
| || ||||| || |||||||||||||||||||||||||||||||||| | | | |
Sbjct 617 T-TTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAGATGTAT 675
Query 698 ---CACGAATCTAGGAG-GATATA---G-TTTCTT-ACTTTGTTTTGATTTTACAGCTGA 748
|||| | | || | ||| | | |||||| | ||||||||||||||||| | ||
Sbjct 676 ATACACGGACCAAGAATAGATCTCCCTGATTTCTTGA-TTTGTTTTGATTTTACAACAGA 734
Query 749 GAGATTTGGACCGCCTCTGCCTATGCCTATTTT-C-CACGTTGTTGAAGATACCGTGACT 806
|||||||||||||| ||| | | |||| ||| | | |||||| | ||||| ||||||
Sbjct 735 GAGATTTGGACCGCGTCTTCATCTGCCG-TTTCACTCTCGTTGT-GTTGATACTGTGACT 792
Query 807 CTATCTAGTGTCAGAGATGAGCAACTCGCAGTGTTATTTAAGCGACGTGGTGCA--TT-A 863
|| ||||||| ||||| ||||| || || ||||||||| || ||| | | || |
Sbjct 793 CTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTCAG-GAC-TCAAAAACGTTGA 850
Query 864 -CATATGGAGATATGGATTACGTA-TGAGATTGGGCCCAGA-GAGGTGTCGTGGAGGAGC 920
| || | || ||||||| ||| | | |||||| ||| | | | ||| || ||||| |||
Sbjct 851 TCCTA-G-AGGTATGGATAACG-ACTAAGATTGAGCCTA-ATGCGGTCTCATGGAGCAGC 906
Query 921 AAGTTGTTCTTAGCGGTGAATAT 943
||| ||||||||| ||||||||
Sbjct 907 AAGGTGTTCTTAGAAGTGAATAT 929
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 165 bits (89), Expect = 9e-40
Identities = 704/983 (72%), Gaps = 114/983 (12%)
Strand=Plus/Plus
Query 21 ATGGCGATGTCGGATCTTACACAG-GATTTGGTAGAAGAGGTGA-TCT-TGAGAGTTCCG 77
||||||||||| ||||| || || |||||| | || ||||| | ||| | || ||||||
Sbjct 1 ATGGCGATGTCCAATCTTCCA-AGAGATTTGTTGGAGGAGGT-ACTCTCT-AGGGTTCCG 57
Query 78 CTAACA-TCTCATA-AAGCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCGAAAA 135
||| | ||| ||| ||||||| |||| ||||| ||||| |||||| ||||| |
Sbjct 58 GTAA-AGTCT-ATAGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTA---ACCT 112
Query 136 AC-TTGATGAGCTTGAAAGGGATAAAC-CT-TGCCAAAGCAAGAGCAGCAACAAA-G--C 189
|| | | |||||| | | | || | || || ||| ||| | |||||||| |
Sbjct 113 ACGGTCA-GAGCTT--CACGAAGAAGCTCTATGGTAAAACAA-TG--GCAACAAAGGAAA 166
Query 190 AGGAGTTTCTGACAATCGTGA-TAATGGATTTTAAGGTTTATCTAATGAGCTTTGATCTC 248
||||||||||| || ||| | |||||||| |||||||| ||||||| | |||||
Sbjct 167 AGGAGTTTCTGGTGGTCATGACT-ATGGATTTGGAGGTTTATTTAATGAGGGTCAATCTC 225
Query 249 CGTGGACTTC--ACA-ATGACAACGACGTGGAATTATCTATAAAGCGAGAAGGTAAACTG 305
| |||| ||| | | |||| ||| | || ||| |||||| | || | ||| ||||||
Sbjct 226 CATGGAATTCATAAAGATGATAACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTC 285
Query 306 ATTAGCCTAAACGAT-A-CAGAG--GGAGTCCG-TG---TATCTAGAGTCTTGCACTGTA 357
||||| ||||| ||| | | ||| |||| || || ||| || |||||| |||||
Sbjct 286 ATTAGGCTAAATGATGATC-GAGTTCGAGT-CGATGATATATGTAAAGTCTTTCACTG-C 342
Query 358 G-CGGTTTGTTGTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGAACCCT 416
| |||||| ||||||||||||| | | | || | |||||||||||||| || |||
Sbjct 343 GACGGTTTATTGTTATGCATCA-C---TATTGGGAT-C-AGGCTTGTGGTTTGTAATCCT 396
Query 417 TGTTCTGGACAAACAAGGTGGATC-GAACCTAGAGGTTCTTACCACA-AAAAGAACAACT 474
| || ||| ||||||||||| ||| |||| ||| | |||||| | || | |||| |
Sbjct 397 TATTGTGGGCAAACAAGGTGTATCAAAACC-AGAAGAGATTACCATATAACCG-ACAATT 454
Query 475 ATGCTCTCGGATAC--G-AGATGAAGAACAAATC-TTGTCG-AAGCTACAAGATTTTGAG 529
| ||||| ||| || | |||||||||||| | | ||| || |||||| || ||| |
Sbjct 455 ACGCTCTTGGACACGAGAAGATGAAGAACAGCCCACT-TCGTAA-CTACAAAATCTTG-G 511
Query 530 ATATTTGGATGCGTATGA-CATTAGTGTAAGGATTCTATATTGTGAGTTTCAAATCTACA 588
| ||| ||| || | | || | || |||| | || |||| |||||||||
Sbjct 512 -TGTTT-CATG-ATA-AATCCTTCCTCCAA-AATTC-----T-TG-GTTTGAAATCTACA 559
Query 589 ATTTTGATTCTAACTCATGGAAGGCTGTT-CAGGCCACTCCTCG-CTGG-AATATA-CAT 644
||||| | ||| | |||||||||| | || | |||| | | |||| ||| || | |
Sbjct 560 ATTTTAACTCTGATTCATGGAAGG-TTTTATATTTCACTTGT-GACTGGAAAT-TACCGT 616
Query 645 TATTATCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC-A-A-A-G--- 697
| || ||||| || |||||||||||||||||||||||||||||||||| | | | |
Sbjct 617 T-TTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAGATGTAT 675
Query 698 ---CACGAATCTAGGAG-GATATA---G-TTTCTT-ACTTTGTTTTGATTTTACAGCTGA 748
|||| | | || | ||| | | |||||| | ||||||||||||||||| | ||
Sbjct 676 ATACACGGACCAAGAATAGATCTCCCTGATTTCTTGA-TTTGTTTTGATTTTACAACAGA 734
Query 749 GAGATTTGGACCGCCTCTGCCTATGCCTATTTT-C-CACGTTGTTGAAGATACCGTGACT 806
|||||||||||||| ||| | | |||| ||| | | |||||| | ||||| ||||||
Sbjct 735 GAGATTTGGACCGCGTCTTCATCTGCCG-TTTCACTCTCGTTGT-GTTGATACTGTGACT 792
Query 807 CTATCTAGTGTCAGAGATGAGCAACTCGCAGTGTTATTTAAGCGACGTGGTGCA--TT-A 863
|| ||||||| ||||| ||||| || || ||||||||| || ||| | | || |
Sbjct 793 CTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTCAG-GAC-TCAAAAACGTTGA 850
Query 864 -CATATGGAGATATGGATTACGTA-TGAGATTGGGCCCAGA-GAGGTGTCGTGGAGGAGC 920
| || | || ||||||| ||| | | |||||| ||| | | | ||| || ||||| |||
Sbjct 851 TCCTA-G-AGGTATGGATAACG-ACTAAGATTGAGCCTA-ATGCGGTCTCATGGAGCAGC 906
Query 921 AAGTTGTTCTTAGCGGTGAATAT 943
||| ||||||||| ||||||||
Sbjct 907 AAGGTGTTCTTAGAAGTGAATAT 929
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 145 bits (78), Expect = 1e-33
Identities = 868/1224 (71%), Gaps = 155/1224 (13%)
Strand=Plus/Plus
Query 21 ATGGCGATGTCGGATCTTACACAGGATTTGGTAGAAGAGGTGATCT-TGAGAGTTCCGCT 79
||||||||||| |||||| || | |||||||| || ||| | |||| | || |||||| |
Sbjct 1 ATGGCGATGTCCGATCTTCCAAATGATTTGGTGGAGGAGATCATCTCT-AGGGTTCCGGT 59
Query 80 AACATCTCATAA-AGCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCGAAAAACT 138
|| |||| |||| |||||| | ||||||||||||||||||||||||||||| || | |
Sbjct 60 AAAATCT-ATAAGAGCAGTAAGCTCTACTTGCAAAAACTGGAACACTTTATCCAACGA-T 117
Query 139 TGATGAGCTTGAA-AGGGATAAAC-CTT-GCCAAAGCAAGAGCAGCAACAAAGCAG---G 192
|| ||||| | ||| | | | ||| | ||| ||| | | |||||||| | |
Sbjct 118 C-AT-AGCTTTACGAGG-A-AG-CTCTTTGGTAAAACAATA--A-CAACAAAGGAAAATG 169
Query 193 AGT-TTCTGACAATCGTGATAATGGATTTTAAGGTTTATCTAATGAGCTTTGATCTCCGT 251
||| || || || |||| ||||||| |||||||||| |||||||| | |||||| |
Sbjct 170 AGTGTT-TGGTGGTCATGATGATGGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCAT 228
Query 252 GGACTTCACAATGACAACGACGTGGA-A---TTA--TC-TATAA-A-GCGAGAAGG-TAA 301
|| ||||||| || ||||||| | | ||| || | || | || | || | |||
Sbjct 229 AGAATTCACAAAGAAAACGACGACAACAACATTAAATCATCTATCATGC-ATAAAGCTAA 287
Query 302 ACTGATTAGCCTAAACGAT-ACAGAGGGAGTCCGTG-TA--TCTAGAGTCTTGCACTGTA 357
||| ||||||||||||||| | || | || | || | || | | || ||||| |
Sbjct 288 ACTCATTAGCCTAAACGATGAT-GACATACTCAATAATACATATATAATTTTTCACTGCA 346
Query 358 GCGGTTT---GTT---GTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGA 411
||||| ||| |||| || ||||| | || | ||| || ||||||||| ||
Sbjct 347 ATGGTTTACTGTTATTGTTAGGCTTCACCGACGA-TGGCATCA-AG-CTTGTGGTTACGA 403
Query 412 ACCCTTGTTCT-GGACAAACAAGGTGGATCGAACCTAGAG--GTTC-TTACCACAAAAA- 466
||||| || | || ||||||||||||||| |||||||| | | ||||||
Sbjct 404 ACCCTCATT-TAGGGCAAACAAGGTGGATCAAACCTAGAAAAGCTAATTACCAGTTTTGT 462
Query 467 GAACAACTATGCTCTCGGATACGAGATGAAGAACAA-ATCT-TGT-CGAAGCTACAAGAT 523
|| ||| || ||| |||||||||||| |||||| || | || | | || | | |||| ||
Sbjct 463 GA-CAAGTACGCTATCGGATACGAGAAGAAGAAGAACAACTCTCTTCGTACCAACAAAAT 521
Query 524 TTTGAGATATTTGGATGC-GTATGACATTAGTG-TAA-GGATTCTATATTGTGAGTTTCA 580
||| ||||| || | || | || || | ||||| ||| | | | ||| |
Sbjct 522 GTTGT--TATTTC-ATAAAGAATC-C-TTC-TGCTTCCGGATT-TAT-T-G-G--TTTGA 569
Query 581 AATCTACAATTTTGATTCTAACT-CATGGAAGGCTGTTC-AGGCCACTCCTCG-CTGG-A 636
||||||||| ||| | ||| || ||||||| | | ||| | ||||| | | |||| |
Sbjct 570 AATCTACAACTTTAACTCTG-CTTCATGGAATGTT-TTCTATTTCACTCGT-GACTGGGA 626
Query 637 ATATACATTATTATCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCA-A 695
|| ||| |||| |||| | | | |||||||||||||||| ||||||||||||||| | |
Sbjct 627 AT-TACCGTATTCTCAA-G-GCG-TGTCTCTCAAGGGAAACACTTACTGGTTTGCT-AGA 681
Query 696 -AGCACGAATCTAGGAGGATATAG--T---T--TC-T--T-ACTT-T-G-T-T-TT--GA 736
|| | ||| || ||||| | || | | || | | |||| | | | | || ||
Sbjct 682 GAG-ATAAATATAAGAGGAGAAAGAATAGATGATCCTCCTGACTTCTTGATCTGTTTTGA 740
Query 737 TTTTACAGCTGAGAGATTTGGACCGCCTCTGC-CTATGCCTATTTT-C-CACGTTGTTGA 793
|||||| | |||||||||||||||| ||| | | |||| ||| | | | || | ||
Sbjct 741 CTTTACAACAGAGAGATTTGGACCGCGTCTTCACC-TGCCC-TTTCACTCTCATTCT-GA 797
Query 794 AGATACCGTGACTCTATCTAGTGTCAGAGATGAGCAACTCGCAGTGTT-ATTTAAGCGAC 852
||||| |||| ||| |||||||| ||||| || || || || ||||| ||| ||||| |
Sbjct 798 TGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCGGTGTTGATT-AAGCG-C 855
Query 853 GTGG-TGCATT-ACATATGGAGATATGGATTACGTA-TGAGATTGGGCCCAGAG-AGGTG 908
| | | || | |||||||| ||| ||||| | | |||||| ||| | || ||||
Sbjct 856 TTCGATTTATGGAGG-ATGGAGATTTGGGTTACG-ACTAAGATTGAGCCTA-AGGAGGTC 912
Query 909 TCGTGGAGGAGCAAGTTGTTCTTAGCGGT-GAATATAAAACCATTTACTTA-TCGATACC 966
|| |||| | |||||||||||||||||| || ||| | |||| | | | | | | |
Sbjct 913 TCATGGA--A-CAAGTTGTTCTTAGCGGTTGA-TATGATACCACTGA-TCACT-GCTTTT 966
Query 967 CACGT---GAACATGGGAGTTTCTTTG-TTGACGAGGAGAAGAAAGTCGCCGTGGTTTTT 1022
|| || | | ||| |||||| ||| |||||||| ||||||| |||| ||||||| ||
Sbjct 967 CA-GTTTTGTA-ATGTGAGTTT-TTTCATTGACGAGAAGAAGAATGTCGTCGTGGTTCTT 1023
Query 1023 GGTAGAGACT-TGGATGAACCTGACCACATTCGCGACGCAGCTTATATCACTGGAAAAGA 1081
|||| ||| | || |||| | || || | || |||| |||| | |||||| ||
Sbjct 1024 GGTAAAGA-TGTGT-TGAA--T-AC-AC----GAAACATAGCTAATATTATTGGAAATGA 1073
Query 1082 TGGATACTTGAAGA-AAGTGGATCTTGGAGAATCTACATTCAAAC-TTGATTCCCCA-TA 1138
||||||||| || | ||||||||||||||||||||||| |||| ||| || |||| |
Sbjct 1074 TGGATACTTTAA-ACAAGTGGATCTTGGAGAATCTACAAACAAATATTG-TTACCCACT- 1130
Query 1139 TATTTGCTCTTCTTATGTTCCAAG 1162
| | ||||||| ||||||||||
Sbjct 1131 TGTGTGCTCTT---ATGTTCCAAG 1151
> AT2G18780.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:8136758-8138118 REVERSE LENGTH=1361
Length=1361
Score = 130 bits (70), Expect = 3e-29
Identities = 579/809 (72%), Gaps = 98/809 (12%)
Strand=Plus/Plus
Query 360 GGTTTGTTGTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGAACCCTTGT 419
||||| |||||||||| ||| |||| | || || | ||| |||| |||||||||||||||
Sbjct 363 GGTTTCTTGTTATGCACCACTAAAG-ACAT-AT-CTAGGGTTGTTGTTTGGAACCCTTGT 419
Query 420 -TCTGGACAAACAAGGTGGATCGAACCTAGAGGTTCTTACCACAAAAAGAACAACTATGC 478
| ||| ||||||| |||||| |||| ||| |||| | ||||| | | | |||||
Sbjct 420 GT-TGGGCAAACAATTTGGATCAAACCCAGAAACTCTTTCAACAAATGGGATAGGTATGC 478
Query 479 TCTCGGATACGA-GATGAAGAACAAATCTTGTCGAAGCTACAAGATTTTGAGATATT-TG 536
||| || ||||| | ||| ||| || || | || ||| ||||||||| || ||
Sbjct 479 TCTGGGCTACGATG-TGATGAA-GAA-----TC--A--TA-AAG-TTTTGAGAT-TTGTG 524
Query 537 GATG-CGTATGACATTAGTGTAA-G-GATTC-TA-TATTGTGAGTTTCAAATCTACAATT 591
|||| || || | || || || | || | || | |||||||||| ||||||||| ||
Sbjct 525 GATGACG-GTG--AGTA-TGGAAGGAGACACTTACT-TTGTGAGTTTGAAATCTACAGTT 579
Query 592 TTGATTCTAACTCATGGAAGGCTGTTCAGGCCACTCCTCG-CTGGAATATACATTATT-A 649
|||| ||| | |||||| ||| | || | | | ||| | ||| | ||| ||| ||
Sbjct 580 TTGAGTCTGATTCATGGGAGGTTCTTGATGTGAATCC-GGATTGGGAGATAGATT-TTGT 637
Query 650 TCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCAAAG-C-ACG--AAT- 704
||| ||||| ||||| || | ||||| | |||||||||||| | || | | | |
Sbjct 638 TCACCGTGGTTTGTCTATCGATGGAAACAGTTACTGGTTTGCAC-GAGACAAGGTTGTTC 696
Query 705 C-TA-GGAGGATATAG-T--TTCTTA---C-T--T-TGTTTTGATTTTACAGCTGAGAGA 752
| || |||||| | || | |||||| | | | ||||||||||| ||| | ||||||
Sbjct 697 CATATGGAGGACA-AGATCCTTCTTATTTCTTGCTGTGTTTTGATTTCACAACGGAGAGA 755
Query 753 TTTGGACCGCCTCTGCCTATGCCTATTTTCCA-CGTT--GTTGAAGATACCGTGACTCTA 809
||| |||||||||||||| |||| | ||| || | || ||| ||||| ||| |||||
Sbjct 756 TTTAGACCGCCTCTGCCTCTGCC-A-TTT-CAGCCTTACTTTGGTGATACTGTGGCTCTA 812
Query 810 TCTAGTGTCAGAGATGAGCA-ACTCGCAGTGTTATTTAAGC-GACGTGGT-G-CAT-TAC 864
||||| || | ||| | || | | || || || | | ||| | | | | | | | |||
Sbjct 813 TCTAGCGTTGGGGATAACCAGA-TTGCGGTCTTGTGTCAGCGGTCTTCTTCGCCGTATAC 871
Query 865 ATATGGAGATATGGATTACGTATG--AGATTGGGCCCAGA-G-AGGTGTCGTGGAGGAGC 920
| || |||||||||||| | | | || ||| ||||| | | | |||||||||| | |
Sbjct 872 CT-TGAAGATATGGATTA-GCA-GCAAGGTTGAGCCCA-ATGCA-GTGTCGTGGA--A-C 923
Query 921 AAGTTGTTCTTAGCGG-TGAATATAAAACCAT-TTACTTATCGATACC--CACGTGA-AC 975
|||||||||||| || || | || ||||| | | ||| | || || | | | | |
Sbjct 924 AAGTTGTTCTTAAAGGTTG-ACATGAAACC-TCTCACTGGT-AATTCCTTCTC-TTATTC 979
Query 976 --ATGGGAGTTTCTTTGTTGACGAGGAGAAGAA-AGTCGCCGTGGTTTTTGGTAGAGAC- 1031
|||||||||||||||||||||||||||||| | | || |||||| ||| || | ||
Sbjct 980 GGGTGGGAGTTTCTTTGTTGACGAGGAGAAGAAGA-TGGCTGTGGTTCTTGATAAAAACA 1038
Query 1032 T---TGGATGAACCTGACCAC-ATTCGCGACGCAGCTTATATCACTGGAAAAGATGGATA 1087
| ||| || | ||||| | | |||| || |||||| |||| |||||| || || ||
Sbjct 1039 TAGGTGG-TGGATTTGACC-CGACTCGCAACATAGCTTACATCATTGGAAAGGAGGGCTA 1096
Query 1088 CTTGAAGAAAGTGGATCTTGGAGAATCTA 1116
||| |||||||| |||||||| |||||||
Sbjct 1097 CTTCAAGAAAGTTGATCTTGGCGAATCTA 1125
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 97.1 bits (52), Expect = 3e-19
Identities = 155/204 (76%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 719 TTTCTTACTTTGTTTTGATTTTACAGCTGAGAGATTTGGACCGCCTCTGCCTATGCCTAT 778
||||||| | ||||||||||| ||| ||||||||||| |||| | ||||| | || |
Sbjct 745 TTTCTTAGTATGTTTTGATTTCACAAAAGAGAGATTTGGGCCGCTTTTGCCTCTACCG-T 803
Query 779 TTTCCACGT-TGTTGAAGATACCGTGACTCTATCTAGTGTCAGAGATGAGCAACTCGCAG 837
|| || | ||||||||||| |||||||||||||| ||||| ||||| || || |
Sbjct 804 TTGAGTGGTATCCTGAAGATACCGCCACTCTATCTAGTGTTAGAGAGGAGCAGCTTGCGG 863
Query 838 TGTTATTTAAGCGACGTGGTG-CATTACATATGG-AGATATGGATTACGTA-TGAGATTG 894
| |||||| ||||| | || ||| || ||| ||||| |||| || || | ||||||
Sbjct 864 TTTTATTTTAGCGATG-GGACACATCG-ATGTGGGAGATACGGATAAC-TACTAAGATTG 920
Query 895 GGCCCAGA-GAGGTGTCGTGGAGG 917
||||| | | |||||||||||||
Sbjct 921 AGCCCA-ACGCGGTGTCGTGGAGG 943
> AT3G14030.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 977 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCGTGGTTTT 1021
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTT 584
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 63.9 bits (34), Expect = 3e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 977 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCGTGGTT 1019
||| |||||||| |||||||||||||||||||||||||||||
Sbjct 930 TGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5