BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929517
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11200.1 | Symbols: | F-box family protein | chr2:4451924-4... 339 6e-92
AT3G18120.1 | Symbols: | F-box associated ubiquitination effec... 196 4e-49
> AT2G11200.1 | Symbols: | F-box family protein | chr2:4451924-4452388
FORWARD LENGTH=465
Length=465
Score = 339 bits (183), Expect = 6e-92
Identities = 365/449 (81%), Gaps = 27/449 (6%)
Strand=Plus/Plus
Query 21 ATGAGAGATTCAACAACGGCGATGTCCGATCTTCCACAAGATATGGTAGAGGAAGTGCTC 80
|||||||||| |||||| ||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1 ATGAGAGATTTAACAACAGCGATGTCCGATCTTCCACGAGATTTGGAAGAGGAAGTGCTC 60
Query 81 TCTAGGGTTCC-GTTAACATCTCTTAGAGCAGTGCGAACTACTTGCAAAA-GCTGGAACA 138
||||||| ||| |||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 61 TCTAGGG-TCCAGTTAGCATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAG-TGGAACC 118
Query 139 GT--TT-ATTCAAA-ACTCGGAGCTTTACAAGGAAGCACATTCGCAAATCAAGAGCAGCA 194
|| || || |||| | ||| |||||||| |||| | ||||| ||||||||| |||||
Sbjct 119 GTCGTTTATCCAAATA-TCG---CTTTACAAAGAAGTATATTCGTAAATCAAGATCAGCA 174
Query 195 ACGAAGAAGAGAGAGTGTATGGCAATCATGATGATCGATTCTAGTGTTTATCTAATGAGT 254
||| | | | ||||| | | || ||||||||| | ||||||||| | |||||||||| |
Sbjct 175 ACGGCGGATAAAGAGTTTTTAGCGATCATGATGTTGGATTCTAGTCTATATCTAATGAAT 234
Query 255 GTTAAT-TTC-CGTGGGATTC-ACAAT-AACGACAACGTTGAATCATTTATAAACCGAAA 310
||| | || | | || | |||| || ||||||||||||||| |||| | ||||
Sbjct 235 GTTGTTATTGACAAG--AT-CGACAACGAAA-ACAACGTTGAATCATCTATAGAGAGAAA 290
Query 311 AGGTAAATTTATTAGCCTAAACAATGTAGATGGAGTTGATATATCTA-GCGTCTTCCACT 369
||||||| | |||||| ||||| | | ||||||||| |||||| || ||||| ||||||
Sbjct 291 AGGTAAACTGATTAGCGTAAACGACGCAGATGGAGTCGATATAA-TAAGCGTCGTCCACT 349
Query 370 CTAGTGGTTTGTTGTTATGCAC-CACCAAAGAAGAAAACTC-GA-GGCTTATGGTTTTGA 426
|| || ||||||||||||| | |||||||||| ||||| | || ||||| |||||| ||
Sbjct 350 ATAATGCTTTGTTGTTATGC-CTCACCAAAGAA-AAAACACCGAAGGCTTGTGGTTTGGA 407
Query 427 ATCCTTATCGTGGCCAAACAAGGTGGATC 455
| |||| |||||| ||| |||||||||||
Sbjct 408 ACCCTTGTCGTGGGCAATCAAGGTGGATC 436
> AT3G18120.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:6210090-6210572 REVERSE LENGTH=483
Length=483
Score = 196 bits (106), Expect = 4e-49
Identities = 262/333 (79%), Gaps = 27/333 (8%)
Strand=Plus/Plus
Query 892 TCCCTGAGATCTTTTTACTCTGTTTTGATTTTACAACTGAGATATTTGGACCACGTCTAC 951
|||||||| || |||||||||| ||||||||||| |||||||||||||| | ||||
Sbjct 98 TCCCTGAG---TTCTTACTCTGTTATGATTTTACAAGAGAGATATTTGGACCCCCTCTAA 154
Query 952 GTCTACCGTTTAAATCTCGCTT--TGGCGATAGC-GTGACTCTATCTAGTGCTAGAGAAG 1008
||||||||||| | ||| || || |||| | |||||||||||||||| |||||| |
Sbjct 155 GTCTACCGTTT-CA-CTCTTTTAATGAAGATA-CTGTGACTCTATCTAGTGTTAGAGATG 211
Query 1009 AGCAACTTTCAGTGTTATGTCAGCG-GTATGATACATTACAGATGGAGATATGGATTA-G 1066
|||||||| ||||||||| | || | | |||||||||||||||||||||||||||||| |
Sbjct 212 AGCAACTTACAGTGTTATTTGAGAGAG-ATGATACATTACAGATGGAGATATGGATTACG 270
Query 1067 TAGCAAA-ATTGAGCCCGAAGCGGTGTTGTGGAACAAGTTGTTAGTAGCAGTGAATATGA 1125
| | || |||||||||||| | | || ||||| ||||||||| |||| ||| ||||
Sbjct 271 -A-CTAAGATTGAGCCCGAAACAGCGTCGTGGAGCAAGTTGTTCTTAGCGGTGGGTATGG 328
Query 1126 AAACACTT-CT--TA--C--TTTCCCATTTAAACATGGGAAtttttttGTTGACGTG-AG 1177
|| |||| || | | |||| || | ||||||||| |||||||||| | ||
Sbjct 329 AACCACTAACTGGTTTGCAGTTTCAGGTTGCCGC-TGGGAATTTCTTTGTTGACGAGGAG 387
Query 1178 GAAGAAAGTCGTCGTAGTTTTTGC-TAAAGACA 1209
|||||||| ||||| ||||||| ||||||||
Sbjct 388 -AAGAAAGTTGTCGT-GTTTTTGGATAAAGACA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5