BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929518

Length=1297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60560.1 | Symbols:  | F-box and associated interaction doma...  56.5    6e-07


> AT5G60560.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125

 Score = 56.5 bits (30),  Expect = 6e-07
 Identities = 35/37 (95%), Gaps = 2/37 (5%)
 Strand=Plus/Plus

Query  827  TTTACTCTGTTTTGATTTTACAACGGAGAGA-TTTGG  862
            ||||||||||||||||||||||||||||| | |||||
Sbjct  672  TTTACTCTGTTTTGATTTTACAACGGAGA-ACTTTGG  707



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 63804892695


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5