BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929526
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16860.1 | Symbols: COBL8 | COBRA-like protein 8 precursor |... 2833 0.0
> AT3G16860.1 | Symbols: COBL8 | COBRA-like protein 8 precursor
| chr3:5759375-5762235 REVERSE LENGTH=2361
Length=2361
Score = 2833 bits (1534), Expect = 0.0
Identities = 1850/2005 (92%), Gaps = 12/2005 (1%)
Strand=Plus/Plus
Query 4 AAGAGATTTAGAGTAATCATGGGTTTAACTCCAAATTTCATTTCATGGATTCTTTTGTTA 63
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 114 AAGAGATTTAGAGTAATCATGGGTTTAACTCGAAATTTCATTTTATGGATTCTTTTGTCA 173
Query 64 TCTATCTTCACGGCGATTCAACTAACATCGTGTCAGCCCAACGCTCCTCCACCACGCTCT 123
||| |||||||||||||||||||||| |||| ||| | |||| |||| ||||||||||||
Sbjct 174 TCTCTCTTCACGGCGATTCAACTAACGTCGTCTCAACGCAACACTCCACCACCACGCTCT 233
Query 124 CCAGACTCTGATCTCTGCAACGGCGTGTTTGTTTCCTACACTTACTCAACCGGTACCAAG 183
|||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 234 AAAGACGCCGATCTCTGCAACGGCGTGTTCGTTTCCTACACTTACTTAACCGGTACCAAG 293
Query 184 ATTAAACCGAACGACACGAAGAACCAGCCGTACCGGTTCGAATCAGAGATCACGGTGCTC 243
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 294 ATTAAACCAAACGACACGAAGAACCAGCCGTACCGGTTCGAATCAGAGATCACGGTCCTA 353
Query 244 AACAACGGCCGCGACGAGCTTAAATCGTGGCGTGTCTTCGTTGGATTCGCCCACCGTGAG 303
||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||
Sbjct 354 AACAACGGCCGCGACGAGCTTAAATCGTGGCAAGTCTTTGTTAAATTCGCCCACCGCGAG 413
Query 304 ATTCTTGTTTCAGCCACCAACGCTGTTCTCTCCGATGGTTCTAGCCTCCCGGTTAGCGTC 363
|||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 414 ATTCTTGTTTCAGCGACCAACGCTGTTCTCTCTGACGGTTCTAGCCTCCCGGCTAGCGTT 473
Query 364 GAGAACGGGACAATCTTCGCCGGGTTTCCATCGGCTGATTTGAAGTCGGCGATTATGACG 423
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 474 GAGAACGGGACAATCTTCGCCGGGTTTCCATCGGCGGATTTGAAGACGGCGATCATGACG 533
Query 424 GCGGGTGACGTCACTCAGATGCAAGCACGTGTTAAGCTCGTGGGTACTCAGTTTGGAGTT 483
|| || ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 534 GCCGGCGACGTAACTCAGATGGAAGCACGTGTTGAGCTCGTGGGTACTCAGTTTGGAGTT 593
Query 484 GCGCCGCCGAATGTTCCGCTTCCGAAGAACATCACTCTTGTTAATGATGGATGGTCTTGT 543
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTCCGCCGAGTGTTCCGCTTCCGAAGAACATCACTCTTGTTAATGATGGATGGTCTTGT 653
Query 544 CCTAAACCCACTCAGCAAGGTAGGAATGTTCTGCAAGTATGTTGCACGCCGAATCCGAAC 603
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 654 CCTAAACCCACTCAACAAGGTAGTAATGTTCTGCAAGTATGTTGCACACCGAATCCGAAC 713
Query 604 ATAACAACAGGCAAAATTGGTGAAATGTTCCTTCCTAGGCAAGAGGGAGATCTAACCATA 663
|| |||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct 714 ATTACAACAAGCAAAATTGGTCAAAAGTTCCTTCCTAGGCAAGAAGGAGATCTAACCATA 773
Query 664 ATGTACGATGTGACCAAAGCATATCAGTCGAATTACTTGGCGCAGGTCACTATCGAGAAT 723
|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 774 ATGTACGATGTGACCAGAGCATATCAGTCGAGTTACTCAGCGCAGGTCACTATCGAGAAT 833
Query 724 CATAACTTGCTTGGTCGGCTTGACAATTGGAATCTAAGTTTTTTGTGGATGAAAGATGAG 783
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 834 CATAACCTGCTTGGTCGGCTTGACAATTGGGATCTAAGTTTTATGTGGATGAAAGATGAG 893
Query 784 TTTATCTTCACAACCAAAGGAGCTTATCCGAGTGTTGTCGATTCATCAGATTGCATCAAT 843
||| ||||| ||||||||||||||||||| |||||||||||||| || |||||||||| |
Sbjct 894 TTTCTCTTCTCAACCAAAGGAGCTTATCCAAGTGTTGTCGATTCGTCGGATTGCATCACT 953
Query 844 GGTCCTCAAGCAAAATACTATAAAGATCTTGACTTCTCTCATGTCTTGAGCTGTGCAAGA 903
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 954 GGTCCTCAAGCAAAATACTATAAAGATCTTGACTTCTCTAATGTCATGAGCTGTGCAAGA 1013
Query 904 AGGCCACACATCATAGACCT-CCCTCTTACTAAGTATAACGATACCGATTTCGGGCGTAT 962
|||||||||||||||||||| ||| || |||||||||||||||||| || ||||||||||
Sbjct 1014 AGGCCACACATCATAGACCTACCC-CTGACTAAGTATAACGATACCAATGTCGGGCGTAT 1072
Query 963 CCCATATTGCTGCAGAAACGGAACGATTCTGCCACGGTCCATGGATCCAGAGAAGTCAAA 1022
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1073 CCCATACTGCTGCAGAAATGGAACTATTCTGCCACGGTCCATGGATCCAGAGAAGTCTAA 1132
Query 1023 ATCAGTCTTTCAAATACAAGTTTACAAAATGCCTCCAGATCTCAACATGTC-TGCCATAA 1081
||| || ||||||||| ||||||||||||||||||| ||||||||||| || | | ||||
Sbjct 1133 ATCGGTTTTTCAAATAGAAGTTTACAAAATGCCTCCTGATCTCAACATCTCCT-CTATAA 1191
Query 1082 CACCTCCCCAGAGCTGGCAGATTAAAGGGAACCTTAACCCGGATTACAAATGTGGTCCTC 1141
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1192 CACCTCCCCAGAGCTGGCAGATTAAAGGTAACCTTAACCCGGATTACAAATGTGGCCCTC 1251
Query 1142 CTGTTCGAGTCAGCTCGAGCCAGTTCCCTGATCCAAGCGGTTTACCCTCAAACCGGAGTG 1201
|| |||| |||||||| ||||||||||||||| |||||||||| || |||||| |||||
Sbjct 1252 CTCTTCGTGTCAGCTCAAGCCAGTTCCCTGATACAAGCGGTTTGCCTTCAAACAAGAGTG 1311
Query 1202 CATTTGCTAGCTGGCAAGTCGTCTGCAACATCACTCAACCAGTTACTCCTAAATGCTGTG 1261
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 1312 CATTTGCTAGCTGGCAAGTCGTCTGCAACATCACTCAACCAACTCCTCCTAAATGCTGCG 1371
Query 1262 TCTCATTCTCTTCTTACTTCAATGATTCAATAATCCCCTGTAAGACCTGCGCTTGTGGAG 1321
|||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 1372 TCTCATTCTCTTCTTATTTCAATGACTCAGTAATCCCGTGTAAGACCTGCGCTTGTGGAG 1431
Query 1322 GTTGCACTAGCGACAGAGTTGCGCGTACTTGCAGCACAACTTCTCCAGCTCTTCTTCTTC 1381
||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1432 GTTGCTCTAGCGACAGAGTGGCGCGTACTTGCAGCACAACTTCTCCAGCTCTTCCTCTTC 1491
Query 1382 CATCTCAGGCTCTTCTTATTCCGTTTGAGAACCGAACCAAACTTACTACCGCTTGGGCAG 1441
||| |||||||||||| ||||| ||||| ||||||||||||||||| | |||||||||||
Sbjct 1492 CATATCAGGCTCTTCTAATTCCATTTGACAACCGAACCAAACTTACCAACGCTTGGGCAG 1551
Query 1442 AGTTAAAACACCGGAAAGTCCCGGACCCATTGCCTTGTGGAGATAACTGTGGAGTCAGTA 1501
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1552 TGTTAAAAAACCGGAAAGTCCCGGACCCATTACCTTGTGGAGATAACTGTGGAGTCAGCA 1611
Query 1502 TAAACTGGCATCTAGCCACGGACTATCGAGGCGGATGGACTGCTCG-GATCACACTCTTC 1560
|||||||||| ||||| || |||||||||||||||||||||||||| | |||||||||||
Sbjct 1612 TAAACTGGCACCTAGCTACAGACTATCGAGGCGGATGGACTGCTCGAG-TCACACTCTTC 1670
Query 1561 AATTGGGGTGAAACTGACTTCGTGGATTGGTTTACCGCGGTTGAACTGAGAAATGCTGCA 1620
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 AACTGGGGTGATACTGATTTCGTGGATTGGTTTACCGCGGTTGAACTGAGAAATGCTGCA 1730
Query 1621 TCCGGTTTTGAGAAAGCGTACTCGTTTAACGGAACTACCATCGCTATCAACGGAAAGAAC 1680
|||||||| |||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct 1731 CCCGGTTTTCAGAAAGCGTACTCGTTTAACGGAAGTATCATCGCGGTCAACGGGAAGAAC 1790
Query 1681 ACCACTGTTTTAATGGAAGGGCTCCCTGGACTGAACTATCTCCTTGCAGAGAGAGACGGA 1740
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1791 ACAACTGTTTTAATGGAAGGGCTCCCTGGACTGAACTATCTCCTTGCAGAGAAAGACGGA 1850
Query 1741 AAAACCCCGAGT-AAGGACTTTCGGTTACCCGGGAAACAGCAGTCAGTTATCTCCTTCAC 1799
|||| ||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1851 AAAAACCCGAGTGAAG-ACTTTCGGATACCCGGGAAACAGCAGTCGGTTATCTCCTTCAC 1909
Query 1800 CAAGAAACTAACTCCTGGACTCAAAGTTGGTTCCAGAGATGGGTTTCCGACCAAAGTATT 1859
||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||| |
Sbjct 1910 CAAGAAACTGACTCCTGGAATCAAAGTTGGTTCCAAAGATGGGTTTCCCACCAAAGTACT 1969
Query 1860 ATTCAACGGCCAAGAATGTTCACTCCCTTCTGTACTACCAACGAACAACGGTCACAAGAA 1919
||||||||||| |||||||||||||||||||||||||| |||| |||| |||||| |||
Sbjct 1970 CTTCAACGGCCAGGAATGTTCACTCCCTTCTGTACTACCCACGAGCAACAGTCACAGGAA 2029
Query 1920 ACATGTATCGACTTTTCTTCTCATGGC-GACTCCATTTTTGGCTCTACTGTTTCTGCGGA 1978
||||||||| || ||||||||||| | ||| ||||||||||||||||||||||| ||||
Sbjct 2030 ACATGTATCCACCTTTCTTCTCATC-CTGACACCATTTTTGGCTCTACTGTTTCTTCGGA 2088
Query 1979 TTTAAGAGTTCCGGTGA-GGAGCTT 2002
||||| |||||| |||| ||| |||
Sbjct 2089 TTTAAAAGTTCCAGTGAAGGA-CTT 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99246477465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5