BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929548
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17070.1 | Symbols: | Peroxidase family protein | chr3:5820... 1633 0.0
AT3G42570.1 | Symbols: | peroxidase family protein | chr3:1468... 444 9e-124
> AT3G17070.1 | Symbols: | Peroxidase family protein | chr3:5820961-5823199
FORWARD LENGTH=1141
Length=1141
Score = 1633 bits (884), Expect = 0.0
Identities = 1005/1064 (94%), Gaps = 6/1064 (1%)
Strand=Plus/Plus
Query 1 TTCCAAACAATAGAAAAAGCGATGAAACCAAAGAGCAAAGTTGCAGAATCTGCAGCTGCA 60
|||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 67 TTCCAAACAAAAGAGAAAGTTATGAAACCAAAGAGCAAAGTTGCAGAATCTACAGCTGCA 126
Query 61 TCATGTTTTCTTC-TCATGAGCTTGATATGCAGCTCCATTAATGGTGAGCAAACGGAGAC 119
|||||||||| || ||||||||||| ||||||||| ||||| |||||| |||| ||||||
Sbjct 127 TCATGTTTTC-TCGTCATGAGCTTGTTATGCAGCTGCATTATTGGTGACCAAATGGAGAC 185
Query 120 TAATAATGAAGGCTTATCTTACAGTTACTACGAGAAGACTTGTCCCAAAGTCGAAGAGAT 179
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 186 TAATAATGAAGGCTTGTCTTACAGTTACTACGAGAAAACTTGTCCCAAAGTCGAAGAGAT 245
Query 180 CGTGAGATCTTCACTTTCATCAATGTTTATACTTGATCCTACTTCTCCGGCAGCCTTGCT 239
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 246 AGTGAGATCTTCACTTTCATCAATGTTTATACTTGATCCTACTTCTCCTGCAGCCTTGCT 305
Query 240 AAGGCTTATGTTTCATGACTGCCAAGTTCAGGGTTGTGACGCATCAATCCTACTCGAACC 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 306 AAGGCTTATGTTTCATGACTGCCAAGTTCAGGGATGTGACGCATCAATCCTACTCGAGCC 365
Query 300 AAGTGGGGACCAACAGTTCACTGAGCTTGATTCAGCCAAGAACTTCGGAATCAGAAAGAG 359
|| | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 366 AATTAGAGACCAACAGTTCACCGAGCTTGATTCAGCCAAGAACTTCGGAATCAGAAAGAG 425
Query 360 GGACCTGATTGGCTCTATCAAAACCTCACTGGAACTTGAGTGTCCCAAGCAAGTCTCATG 419
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 426 GGACCTGGTTGGCTCTATCAAAACCTCACTAGAGCTTGAGTGTCCCAAGCAAGTCTCATG 485
Query 420 CTCCGACGTCATCATCCTCGCCGCCAGAGACGCCGTGGCTCTCACGGGAGGTCCACTCAT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 486 CTCTGACGTCATCATCCTCGCCGCCAGAGACGCCGTGGCTCTCACGGGAGGCCCACTCAT 545
Query 480 CGCTGTGCCATTAGGACGAAAAGACTCTCTCTCTACTCCAAGCAAACATGTGGCAGACTC 539
| | ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 546 CTCCGTGCCATTAGGACGAAAAGACTCCCTCTCCACTCCAAGCAAACACGTGGCAGACTC 605
Query 540 TGAGCTTCCTCCCTCCACTGCTGACGTGGACACTACCTTGAA-CCTCTTTGC-AAGCAAA 597
||||||||||||||||||||||||||| ||||||||||| || ||| || || || ||||
Sbjct 606 TGAGCTTCCTCCCTCCACTGCTGACGTTGACACTACCTT-AAGCCTATTCGCTAA-CAAA 663
Query 598 GGCATGACCATTGAAGAGTCCGTAGCCATCATGGGTGCGCATACGATAGGAGTCACACAT 657
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 664 GGCATGACCATCGAAGAGTCCGTGGCCATCATGGGTGCACATACGATAGGAGTCACACAT 723
Query 658 TGCAACAACGTATTATCGCGTTTCGATAACGCAAACGCGACAAGTGAGAACATGGATCCA 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 724 TGCAACAACGTATTATCGCGTTTCGATAACGCAAACGCGACAAGCGAGAACATGGATCCA 783
Query 718 CGTTTTCAAACGTTTTTGCGTGTGGCTTGTCCAGAGTTTTCTCCAACTTCTCAAGCTGCG 777
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 784 CGTTTTCAAACGTTCTTGCGTGTTGCTTGTCCAGAGTTTTCTCCAACTTCTCAAGCTGCG 843
Query 778 GAAGCCACATTTGTCCCCAACGATCAAACTTCAGTGATCTTCGATACAGCTTATTACGAT 837
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 GAAGCCACATTTGTCCCCAACGATCAAACTTCGGTGATCTTCGATACAGCTTATTACGAT 903
Query 838 GATGCAATCGCGGGACGTGGAAATCTTAGAATTGACTCGGAGATTGGAGCTGATCCACGT 897
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 904 GATGCCATCGCGGGACGTGGCAATCTTAGGATTGACTCGGAGATTGGAGCTGATCCACGT 963
Query 898 ACACGTCCGTTTGTCGAAGCGTTTGCGGCTGACCAAGACCGCTTCTTCAACGCTTTCTCT 957
|||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 964 ACACGTCCATTTGTGGAAGCGTTTGCAGCTGATCAAGACCGTTTCTTCAACGCCTTCTCT 1023
Query 958 TCCGCGTTTGTAAAATTGTCGTCTTACAAAGTGTTAACCGGGAGTGAAGGAGTAGTTAGA 1017
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1024 TCCGCGTTTGTAAAATTGTCGTCTTACAAAGTGTTAACCGGGAATGAAGGAGTAATTAGA 1083
Query 1018 AGCGTATGTGACAAGGTTGACTGATGTATATTTATAATTATCAA 1061
||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1084 AGCGTGTGTGACAAGGTTGATTGATGTATATTTATAATTATCAA 1127
> AT3G42570.1 | Symbols: | peroxidase family protein | chr3:14689058-14690347
FORWARD LENGTH=453
Length=453
Score = 444 bits (240), Expect = 9e-124
Identities = 305/337 (91%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 298 CCAAGTGGGGACCAACAGTTCACTGAGCTTGATTCAGCCAAGAACTTCGGAATCAGAAAG 357
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct 106 CCAAGTGGGGACCAACAGTTCACTGAGCTTGATTCAGTTGAGAACTTAGGAATCAAAAAG 165
Query 358 AGGGACCTGATTGGCTCTATCAAAACCTCACTGGAACTTGAGTGTCCCAAGCAAGTCTCA 417
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 166 AGGGACCTGATTGGCTCTATCAAAACCTCACTGGAGCATGAGTGTCCCAAGCAAGTCTCA 225
Query 418 TGCTCCGACGTCATCATCCTCGCCGCCAGAGACGCCGTGGCTCTCACGGGAGGTCCACTC 477
||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 226 TGCTCTGACGTCATCATCCTCTCCGCCAGAGACACCGTGGCTCTCACGGGAGGCCCACTC 285
Query 478 ATCGCTGTGCCATTAGGACGAAAAGACTCTCTCTCTACTCCAAGCAAACATGTGGCAGAC 537
|| | |||| |||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 286 ATTTCCGTGCTATTAGGACGAAAAGACTCCCTCTCCACTCCAAGCAAACACGTGGCAGAC 345
Query 538 TCTGAGCTTCCTCCCTCCACTGCTGACGTGGACACTACCTTGAA-CCTCTTTGCAAGCAA 596
||||||| |||||||||||||||||| || ||||| ||||| || ||| || || |||||
Sbjct 346 TCTGAGCCTCCTCCCTCCACTGCTGATGTTGACACCACCTT-AAGCCTATTCGCTAGCAA 404
Query 597 AGGCATGACCATTGAAGAGTCCGTAGCCATCATGGGT 633
||||||||||||||| |||| || ||||| ||||||
Sbjct 405 TGGCATGACCATTGAACAGTCTGTGGCCATTATGGGT 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5