BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929549

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17080.1 | Symbols:  | Plant self-incompatibility protein S1...   516    7e-146


> AT3G17080.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:5825289-5825867 FORWARD LENGTH=579
Length=579

 Score =  516 bits (279),  Expect = 7e-146
 Identities = 349/383 (91%), Gaps = 3/383 (1%)
 Strand=Plus/Plus

Query  1    TTATGTTCACGAGTGCAACTATGTCCCGAGCCTCGACGACTGTAGTGATTTATAATGATC  60
            ||||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct  91   TTATGTTTATGAGTGCAATTATGTCTCGAGCCTCGACGAGTGTAGTGATTTATAATGATC  150

Query  61   TTGGAGGTGGTTTGCCACTACGGTACCACTGCAAATCAGGGGACGATGATCTTGGAGACC  120
            ||||||||||||||||||||||| |||||||||||||| | || |||||||||||| |||
Sbjct  151  TTGGAGGTGGTTTGCCACTACGGCACCACTGCAAATCAAGAGAGGATGATCTTGGATACC  210

Query  121  GGAGTTTAGCACCAGGTGGATCGTGGTCGTTTGGATTTACTCCGGATATCTTCGGCAGGA  180
             |||||||||||||||| |||||||||||||||||||||| |||||||| || ||| |||
Sbjct  211  AGAGTTTAGCACCAGGTAGATCGTGGTCGTTTGGATTTACACCGGATATTTTTGGCCGGA  270

Query  181  CTTTGTTTTTCTGTAGCTTTAGTTGGGGAAATGAGAGTCATAAATTTGATATCTACAAAC  240
            ||||||||| |||| | ||||||||||||  ||||||||||| |||||||||||||||||
Sbjct  271  CTTTGTTTTACTGTCGTTTTAGTTGGGGAGCTGAGAGTCATATATTTGATATCTACAAAC  330

Query  241  AGAGTAGAGACAAAGAATTTCAAGAGTTTGGCTGCAAAAAATGCGAATGGAAAATACGGA  300
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  331  AGAGTAGAGACAAAGAATTTCAAGAGTTTGGTTGCAAAAAATGCGAATGGAAAATACGGA  390

Query  301  AAAATGGACCTTGCAAGTTGAATGGGAAGACCGGCGTGTTTGATGGTTGCT-TTCCTTGG  359
            |||||||||||||||||||  ||  |||||||||| ||||||||  ||||| ||| ||||
Sbjct  391  AAAATGGACCTTGCAAGTTTTATAAGAAGACCGGCATGTTTGATCATTGCTATTC-TTGG  449

Query  360  GATTAA-ATCCTTCTTTTATAAA  381
            |||||| |||||| |||||||||
Sbjct  450  GATTAATATCCTTATTTTATAAA  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5