BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929555
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17130.1 | Symbols: | Plant invertase/pectin methylesterase... 850 0.0
> AT3G17130.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:5844495-5845046 REVERSE
LENGTH=552
Length=552
Score = 850 bits (460), Expect = 0.0
Identities = 523/553 (95%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 30 ATGAAGAGATCCTCCACAGTCACATCATTACCGTGTCTCTCCCTATTTCTCC-TCTTGCT 88
||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| || ||||
Sbjct 1 ATGAAAAGATCATCCACCGTCACATCATTACCGTGTCTCTCCCTCTTTCTCCTTC-TGCT 59
Query 89 ACTGCCGTCGGTAGTCCAATCCTCCGACGACCTTATCGACAAAATATGCCAAGCAACGCC 148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTGCCGTCGGTAGTCCAATCCTCCGACGACCTTATCGACAAAATATGCCAAGCAACGCC 119
Query 149 GTTCTGCGACCTCTGTGAAGCCTCTCTCCGTCCACTCTCTCCCTCACCTTCTGATCCAAA 208
||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||| ||
Sbjct 120 ATTCTGCGACCTATGTGAAGCCTCTCTTCGTCCATTCTCTCCGTCACCTTCTGATCCCAA 179
Query 209 ATCCTTAGCCGCCGCTATGGCCAGTGTCGTCCTCGGAAACATGACCGATACTTTAGGATA 268
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 180 ATCCTTAGGTGCCGCTATGGCCAGCGTCGTGCTCGGAAACATGACCGATACTTTAGGATA 239
Query 269 CATTCAATCGCTGATCAAACATTCTCACGATCCTGCGGCAGAGCGCGCGCTGGCTCAGTG 328
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 CATCCAATCGCTGATCAAACATGCTCACGATCCTGCGGCAGAGCGCGCGCTGGCTCAGTG 299
Query 329 CGCCGAGCTGTACCGGCCGGTGGTCAAGTTTAATATTCCTCAGGCGATGGAGGCAATGCA 388
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGCTGAGCTGTACCGGCCGGTGGTCAAGTTTAATATTCCTCAGGCGATGGAGGCAATGCA 359
Query 389 GGGCGGCAAATTTGGATTTGCGATATATGTACTCGGAGACGCCGAGAAGCAGACTGATTC 448
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGGCGGCAAATTCGGCTTTGCGATATATGTGCTCGGAGACGCCGAGAAGCAGACTGATTC 419
Query 449 TTGTCAGAAAGGGATCACGAACACCGGCGCCGACGATGAAAGCTCGGTGGCTGTTACGGC 508
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGTCAGAAAGGAATCACGAACGCCGGCGCCGACGATGAAAGCTCGGTGGCTGTTACGGC 479
Query 509 TAGAAACAAGCTAGTTAAGAATCTTTGTGACGTGGCGATTTCTGTGCTTAAGTCTCTTAT 568
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TAGAAACAAGCTAGTTAAAAATCTTTGTGACGTGGCGATTTCTGTGCTTAAGTCTCTGAT 539
Query 569 GA--G-TCTTTAA 578
|| | |||||||
Sbjct 540 GAATGGTCTTTAA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5