BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929561
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17480.1 | Symbols: | F-box and associated interaction doma... 167 2e-40
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 152 6e-36
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 63.9 3e-09
> AT3G17480.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5983199-5984320 FORWARD LENGTH=1122
Length=1122
Score = 167 bits (90), Expect = 2e-40
Identities = 210/266 (79%), Gaps = 16/266 (6%)
Strand=Plus/Plus
Query 30 ATGTCCGATCCTT-CAGAGGATTTGGTAGAAGAGATACTCTCTAAGGATCCGGCTAGATC 88
||||||| | ||| | || ||||||||||| || |||||||||| || ||| || | |||
Sbjct 22 ATGTCCG-TTCTTACCGAAGATTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATC 80
Query 89 TCTGA-AACGATTACGATCTACTTGCAAACAGTGGAACACATTATTCAATGATCATAGAT 147
||| | |||||||||||||||||||||||||||||| || |||| ||||||| |||||
Sbjct 81 TCT-AGTTCGATTACGATCTACTTGCAAACAGTGGAACGCAATATTAAATGATCGTAGAT 139
Query 148 TCACCAAGAAGCACTATGATAAAGCACCAAAGGAGT-TTCTAGTTCTCATGTTGAAG-AC 205
||| ||||||||||| ||||| |||| |||||||| || | | | | |||| ||| |
Sbjct 140 TCATCAAGAAGCACTTTGATACAGCAGAAAAGGAGTATT-TGGATATGTTGTT-AAGGAG 197
Query 206 T-TATAAGGTTTATTT-AGTGAGTGTCAAACTC-AGCGGAATTCACAACAACATTGATCC 262
| | || ||||| || | |||||||||| ||| | ||| |||| |||||||||||||
Sbjct 198 TCT-TAGGGTTTCTTCGA-TGAGTGTCAATCTCCAT-GGACTTCATGACAACATTGATCC 254
Query 263 GGT-TATGGAGGTTAAGGGTGAACTT 287
| ||| ||| | ||| ||||||||
Sbjct 255 T-TCTATAGAGCTAAAGCGTGAACTT 279
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 152 bits (82), Expect = 6e-36
Identities = 135/160 (84%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 47 GGATTTGGTAGAAGAGATACTCTCTAA-GGATCCGGCTAGATCTCTGAAACGATTACGAT 105
||||||||||||||| |||||||| || || | |||| | ||||||||||||||||||||
Sbjct 18 GGATTTGGTAGAAGAAATACTCTC-AAGGGTTTCGGCCACATCTCTGAAACGATTACGAT 76
Query 106 CTACTTGCAAACAGTGGAACACATTATTCAATGATC-ATAGATTCA-CCAAGAAGCACTA 163
||||||||||||| |||||||| |||||||| | | | || |||| ||| ||| ||||
Sbjct 77 CTACTTGCAAACAATGGAACACTTTATTCAAAAAACGA-AGTTTCAGCCA-GAAACACTT 134
Query 164 TGATAAAGCACCAAAGGAGTTTCTAGTTCTCATGTTGAAG 203
| ||| ||| |||||||||| | | |||||||||||||||
Sbjct 135 TCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAG 174
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 63.9 bits (34), Expect = 3e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 546 ATCTATGAGTTTAACTCTGATTCATGGAGGGTTCTTGATG 585
||||| || |||||||||||||||||||||||||||||||
Sbjct 591 ATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5