BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929571
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17240.1 | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr... 2627 0.0
AT1G48030.1 | Symbols: mtLPD1 | mitochondrial lipoamide dehydro... 1430 0.0
> AT3G17240.1 | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr3:5889872-5892252
REVERSE LENGTH=1919
Length=1919
Score = 2627 bits (1422), Expect = 0.0
Identities = 1541/1598 (96%), Gaps = 9/1598 (1%)
Strand=Plus/Plus
Query 8 AACAA-AACAACAACAACGATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCT 66
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AACAACAACAACAATAACGATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCT 127
Query 67 CACCAGAAACATCTCCAATTCTCCCACTGACGCTCTCAGATTCTCTCTCTCCCTCACTCG 126
||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 128 CACCAGAAACATCTCTAATTCTCCCACTGATGCTTTCAGATTCTCTTTCTCCCTCACTCG 187
Query 127 CGGCTTCGCTTCGTCGGGATCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGG 186
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CGGCTTCGCTTCGTCAGGATCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGG 247
Query 187 AGGATATGTGGCGGCGATTAAGGCGGCACAGCTCGGTCTCAAGACAACCTGTATCGAAAA 246
||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 248 AGGTTATGTGGCGGCGATTAAAGCGGCACAGCTCGGTCTTAAGACTACCTGTATCGAAAA 307
Query 247 GCGCGGCGCTCTCGGTGGTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCT 306
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GCGAGGCGCTCTCGGTGGTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCT 367
Query 307 TCACTCTTCTCACATGTACCATGAAGCAAAGCACGTTTTTGCTAACCATGGTGTTAAGGT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TCACTCTTCTCACATGTACCATGAAGCAAAGCACGTTTTTGCTAACCATGGTGTTAAGGT 427
Query 367 TTCTTCAGTTGAGGTAGATCTTCCTGCTATGTTGGCTCAGAAAGACACAGCCGTCAAGAA 426
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 428 CTCTTCGGTTGAGGTAGATCTTCCTGCTATGTTGGCGCAGAAAGACACAGCCGTCAAGAA 487
Query 427 TCTCACCCGTGGTGTCGAAGGTCTTTTCAAGAAGAACAAGGTAAACTATGTTAAGGGCTA 486
| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 488 TTTAACCCGTGGAGTCGAAGGTCTGTTCAAGAAGAACAAGGTAAACTATGTTAAGGGCTA 547
Query 487 CGGTAAGTTTCTGTCCCCATCAGAAGTCTCTGTGGACACAATCGATGGAGAAAACTTGGT 546
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 548 TGGTAAGTTTCTGTCCCCATCGGAAGTCTCTGTGGACACAATCGATGGAGAAAACGTGGT 607
Query 547 TGTCAAAGGCAAACATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCAGGCAT 606
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 608 TGTGAAAGGCAAACATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCTGGAAT 667
Query 607 CACCATCGATGAAAAGAAGATTGTCTCATCAACTGGGGCACTGTCTCTGACAGAAATCCC 666
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 668 CACCATCGATGAAAAGAAGATTGTCTCATCAACCGGGGCACTGTCTCTGACAGAGATCCC 727
Query 667 AAAGAAACTCATTGTCATTGGTGCTGGCTATATTGGGCTCGAGATGGGTTCTGTATGGGG 726
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 728 AAAGAAACTCATTGTCATTGGTGCTGGCTATATTGGGCTAGAGATGGGTTCTGTATGGGG 787
Query 727 ACGGCTCGGATCAGAGGTCACAGTTGTTGAGTTTGCAGCGGATATCGTACCAGCAATGGA 786
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 ACGGCTAGGATCAGAGGTCACAGTTGTTGAGTTTGCAGCGGATATCGTACCAGCAATGGA 847
Query 787 TGGTGAAATCCGCAAGCAGTTTCAACGTTCACTAGAGAAGCAAAAGATGAAATTCATGCT 846
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 848 TGGTGAAATCCGCAAGCAGTTTCAACGCTCACTAGAGAAGCAGAAGATGAAATTTATGCT 907
Query 847 CAAGACTAAAGTCGTCGGCGTAGATTCATCTGGAGATGGTGTGAAACTCATAGTGGAACC 906
||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 908 CAAAACTAAAGTCGTTGGGGTAGATTCATCTGGAGATGGTGTTAAACTCATAGTGGAACC 967
Query 907 TGCTGAAGGTGGAGAGCAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAG 966
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGCTGAAGGTGGAGAACAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAG 1027
Query 967 AACTCCGTTCACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGCGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AACTCCGTTCACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGCGG 1087
Query 1027 GAGAATTCTGGTGAACGAGAGATTCTCGACAAATGTTTCAGGCGTTTATGCAATTGGAGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GAGAATTCTGGTGAACGAGAGATTCTCGACAAATGTTTCAGGCGTTTATGCAATTGGAGA 1147
Query 1087 TGTGATTCCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTCGCATGTGTTGA 1146
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1148 TGTGATTCCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTTGCATGTGTTGA 1207
Query 1147 GTTTATAGCAGGCAAACACGGTCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACAC 1206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GTTTATAGCAGGCAAACACGGGCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACAC 1267
Query 1207 GTACCCTGAAGTTGCCTCAGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGACGGTGTAAG 1266
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1268 GTACCCTGAAGTTGCGTCGGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGAAGGTGTAAG 1327
Query 1267 CTACAATGTCGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACAGT 1326
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 CTACAATGTTGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACAGC 1387
Query 1327 AGAGGGACTGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACAT 1386
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 AGAGGGAATGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACAT 1447
Query 1387 TATGTCACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGC 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TATGTCACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGC 1507
Query 1447 ATCAAGCGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAA 1506
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 ATCAAGTGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAA 1567
Query 1507 GGAAGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCTCTCAGGTATATC 1566
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 1568 GGAAGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAGCCCTCAGG-AGATG 1626
Query 1567 ATGGAGATGTGGATTGAGGGAGAAGGAAGTAAAGCCGC 1604
|||| | || | |||||||||||||||||||||||
Sbjct 1627 -TGGA--T-TG-A--GAGGGAGAAGGAAGTAAAGCCGC 1657
> AT1G48030.1 | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase
1 | chr1:17717139-17719141 REVERSE LENGTH=1717
Length=1717
Score = 1430 bits (774), Expect = 0.0
Identities = 1293/1544 (84%), Gaps = 34/1544 (2%)
Strand=Plus/Plus
Query 26 ATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCTCACCAGAAACATCTCCAAT 85
|||||||||||||| ||||||||||| || ||||| ||||||||||||||| | || ||
Sbjct 1 ATGGCGATGGCGAGTTTAGCTAGGAGGAAGGCGTATTTTCTCACCAGAAACTTATCAAAC 60
Query 86 TCTCCCACTGACGCTCTCAGATTCT-CTCTCTCCCTCACTCGCGGCTTCGCTTCGTCGGG 144
||||||||||||||||||||||||| || | |||||| | || |||||||| || || ||
Sbjct 61 TCTCCCACTGACGCTCTCAGATTCTCCT-TTTCCCTCTCCCGTGGCTTCGCCTCATCAGG 119
Query 145 ATCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGGAGGATATGTGGCGGCGAT 204
||| || || ||||||||||||||||||||||||||||| || || || || || |||||
Sbjct 120 ATCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGAT 179
Query 205 TAAGGCGGCACAGCTCGGTCTCAAGACAACCTGTATCGA-AAAGCGCGGCGCTCTCGGTG 263
|| || | ||||| |||||||| || || |||||||| ||| ||||||||||||||||
Sbjct 180 CAAAGCCTCTCAGCTTGGTCTCAAAACCACTTGTATCGAGAAA-CGCGGCGCTCTCGGTG 238
Query 264 GTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCTTCACTCTTCTCACATGT 323
|||||||||| |||||||| || |||||||| ||||| || ||||||||||| || ||||
Sbjct 239 GTACTTGTCTCAACGTCGGTTGCATTCCTTCCAAGGCTCTGCTTCACTCTTCACATATGT 298
Query 324 ACCATGAAGCAAAGCACGTT--TTTGCTAACCATGGTGTTAAGGTTTCTTCAGTTGAGGT 381
||||||| || ||||| || || |||||||||||| ||||||| ||||| ||||||||
Sbjct 299 ACCATGAGGCGAAGCA--TTCCTTCGCTAACCATGGTATTAAGGTCTCTTCTGTTGAGGT 356
Query 382 AGATCTTCCTGCTATGTTGGCTCAGAAAGACACA-GCCGTCAAGAATCTCACCCGTGGTG 440
|||||||||||||||||||||||||||||| | | || || ||||| ||||| ||||||
Sbjct 357 AGATCTTCCTGCTATGTTGGCTCAGAAAGATA-ATGCGGTTAAGAACCTCACTCGTGGTA 415
Query 441 TCGAAGGTCTT-TTCAAGAAGAACAAGGTAAACT-ATGTTAAGGGCTACGGTAAGTTTCT 498
| || ||| || |||||||| || ||||| | || |||| || || || ||||||||| |
Sbjct 416 TTGAGGGT-TTGTTCAAGAAAAATAAGGTGA-CTTATGTCAAAGGATATGGTAAGTTTAT 473
Query 499 GTCCCCATCA-GAAGTCTCTGTGGACACAATCGATGGAG-AAA-ACTTGGTTGTCAAAGG 555
|||||| | |||||||| ||||| || || ||||||| ||| ||| |||| |||||
Sbjct 474 TTCCCCAA-ATGAAGTCTCGGTGGAGACTATTGATGGAGGAAACACTA--TTGTGAAAGG 530
Query 556 CAAACATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCAGGCATCACCATCGA 615
||||||||||| ||||| |||||||||||||| ||||| ||||| || || || || ||
Sbjct 531 TAAACATATCATTGTTGCTACTGGCTCGGATGTTAAGTCCTTGCCTGGTATTACGATTGA 590
Query 616 TGAAAAGAAGATTGTCTCATCAACTGGGGCACTGTCTCTGA-CAGAAATCCCAAAGAAAC 674
||||||||||||||| || || ||||| || ||||||| | | ||| | || ||||||
Sbjct 591 TGAAAAGAAGATTGTTTCGTCGACTGGAGCGTTGTCTCT-ATCGGAAGTTCCGAAGAAAT 649
Query 675 TCATTGTCATTGGTGCTGGCTATATTGGGCTCGAGATGGGTTCTGTATGGGG-ACGGCTC 733
| ||||| |||||||| || ||||||||||| |||||||||||||| ||||| | ||||
Sbjct 650 TGATTGTTATTGGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTA-GGCTT 708
Query 734 GGATCAGAGGTCACAGTTGTTGAGTTTGCAGCG-GATATCGTACCAGCAATGGATGGTGA 792
||||| ||||| || |||||||||||||| | | ||||| || || | |||||||||||
Sbjct 709 GGATCTGAGGTTACGGTTGTTGAGTTTGCTG-GAGATATTGTTCCTTCGATGGATGGTGA 767
Query 793 AATCCGCAAGCAGTTTCAACGTTCACTAGAGAAGCAAAAGATGAAATTCATGCTCAAGAC 852
||| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 768 AATTCGTAAGCAGTTTCAACGTTCTCTTGAGAAGCAGAAGATGAAGTTCATGCTCAAGAC 827
Query 853 TAAAGTCGTCGGC-GTAGATTCATC-TGGAGATGGTGTGAAACTCATAGTGGAACCTGCT 910
|||||| || | || ||||| || | ||||||||||| || | ||||||||| ||
Sbjct 828 TAAAGTTGTTT-CTGTGGATTCCTCCTCT-GATGGTGTGAAGCTTACAGTGGAACCGGCA 885
Query 911 GAAGGTGGAGAGCAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAGAACT 970
||||| ||||||||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 886 GAAGGAGGAGAGCAGTCTATTCTGGAAGCTGATGTGGTACTTGTCTCAGCGGGAAGAACA 945
Query 971 CCGTTCACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGCGGGAGA 1030
|||||||| |||||||||||||| |||||||||||||| || || ||||||| ||||||
Sbjct 946 CCGTTCACTTCTGGACTTGATCTGGAGAAAATCGGAGTGGAAACTGACAAAGCCGGGAGG 1005
Query 1031 ATTCTGGTGAACGAGAGATTCTCGACAAATGTTTCAGGCGTTTATGCAATTGGAGATGTG 1090
||||||||||| || ||||||| || ||||| ||||||| ||||| ||||||||||||
Sbjct 1006 ATTCTGGTGAATGATAGATTCTTGAGTAATGTCCCAGGCGTGTATGCTATTGGAGATGTG 1065
Query 1091 ATTCCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTCGCATGTGTTGAGTTT 1150
||||||||||||||||| |||||||||||||||||||| ||||| || ||||| |||||
Sbjct 1066 ATTCCAGGACCAATGCTTGCTCACAAAGCCGAAGAAGACGGTGTTGCTTGTGTGGAGTTC 1125
Query 1151 ATAGCAGGCAAACACGGTCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACACGT-A 1209
||||||||||||||||||||||| ||||| ||||| || ||||| ||||| ||||| | |
Sbjct 1126 ATAGCAGGCAAACACGGTCATGTTGATTATGACAAGGTTCCTGGTGTTGTTTACAC-TCA 1184
Query 1210 CCCTGAAGTTGCCTCAGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGACGGTGTAAGCTA 1269
||||| ||||| || |||||||||||||| || |||||||||||||| ||||| || ||
Sbjct 1185 TCCTGAGGTTGCTTCGGTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTA 1244
Query 1270 CAATGTCGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACA-GTAG 1328
| || || |||||||| || ||||| ||||||||||| ||||| || || | | | ||
Sbjct 1245 CCGGGTTGGGAAATTCCCGTTTATGGCGAATAGCAGAGCTAAGGCTATTGATA-ATGCAG 1303
Query 1329 AGGGACTGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACATTA 1388
| ||| |||| |||||| |||| ||||| ||||| || ||||||||||| ||||||||||
Sbjct 1304 AAGGATTGGTTAAGATTCTGGCCGATAAGGAGACTGATAAGATCTTGGGCGTTCACATTA 1363
Query 1389 TGTCACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGCAT 1448
|| | |||||||| ||||| |||| |||||||| ||||| || || ||||| |||||||
Sbjct 1364 TGGCGCCAAACGCTGGAGAGCTGATTCATGAGGCTGTTCTTGCGATTAACTACGATGCAT 1423
Query 1449 CAAGCGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAAGG 1508
|||| |||||||||||||||||||| || ||||||||||| ||||| |||||| | ||||
Sbjct 1424 CAAGTGAAGACATTGCTCGAGTCTGCCATGCTCATCCCACTATGAGCGAGGCTCTTAAGG 1483
Query 1509 AAGCTGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAG 1552
||||||||||||| |||||||||||||| |||||||| || |||
Sbjct 1484 AAGCTGCCATGGCCACCTATGACAAGCCTATTCACATCTAAAAG 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5