BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929580

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17300.1 | Symbols:  | unknown protein; Has 48 Blast hits to...   603    4e-172


> AT3G17300.1 | Symbols:  | unknown protein; Has 48 Blast hits 
to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes 
- 8 (source: NCBI BLink). | chr3:5907234-5908893 FORWARD 
LENGTH=600
Length=600

 Score =  603 bits (326),  Expect = 4e-172
 Identities = 336/341 (99%), Gaps = 0/341 (0%)
 Strand=Plus/Plus

Query  1    GCTCGAGATCTCCTGTGAAAATGCCGTCTTTGCAAACTTCTCTGCCTCCTGAACTCGCTA  60
            |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  107  GCTCAAGATCTCTTGTGAAAATGCCGTCTCTGCAAACTTCTCTGCCTCCTGAACTCGCTA  166

Query  61   ACAATGTGGTTAGGTTGTACCGAGAATGTCTTCGTAGAGCTAAATTTATTGGTAAGCAGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  167  ACAATGTGGTTAGGTTGTACCGAGAATGTCTTCGTAGAGCTAAATTTATTGGTAAGCAGC  226

Query  121  AACACAACACTGAGCTAGTGGTTGGTATGGTGAGGCAACAATTTAAGAAACACATGAATG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227  AACACAACACTGAGCTAGTGGTTGGTATGGTGAGGCAACAATTTAAGAAACACATGAATG  286

Query  181  AGACAGACCCTGAGAAGATTCAGAAGCTTAAAGATGATGCTGCTCGGGGACTCATCAATC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287  AGACAGACCCTGAGAAGATTCAGAAGCTTAAAGATGATGCTGCTCGGGGACTCATCAATC  346

Query  241  ACATGTTGTTTGAGTCAGCAAAGCTGACAGGAGGCAAGGTTAGCCAGAGATCCTGATGCA  300
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  347  ACATGTTGTTTGAGTCAGCGAAGCTGACAGGAGGCAAGGTTAGCCAGAGATCCTGATGCA  406

Query  301  GTCTGGTTGCAGACTCTCCCATTGTTACTCTCTCTCTATCT  341
            ||||||||||||||||||||||||||| |||||||||||||
Sbjct  407  GTCTGGTTGCAGACTCTCCCATTGTTATTCTCTCTCTATCT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5