BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929584
Length=3318
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17340.2 | Symbols: | ARM repeat superfamily protein | chr3... 5365 0.0
> AT3G17340.2 | Symbols: | ARM repeat superfamily protein | chr3:5920478-5926928
REVERSE LENGTH=3499
Length=3499
Score = 5365 bits (2905), Expect = 0.0
Identities = 3186/3322 (96%), Gaps = 18/3322 (1%)
Strand=Plus/Plus
Query 7 aaaaaaaaGAAACGCAATGTTCGTCGGCGACGACGACTCAGTTCAGATTGTTCGGCTTCT 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AAAAAAAAGAAACGCAATGTTCGTCGGCGACGACGACTCAGTTCAGATTGTTCGGCTTCT 126
Query 67 TGACCAGACGCTTACTTCCATTGATGGCGTTGCAGTCCGCGAGGCGACGGAGGCTCTGGA 126
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 127 TGACCAGACGCTTACTTCTATTGATGGCGTTTCTGTCCGCGAGGCGACGGAGGCTCTGGA 186
Query 127 TCGACTTTCTACGGAGCTCCCTCACTTCCCTTATCGTCTTCTCTCCCTCGCTTCCGGAGG 186
|| ||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct 187 TCTACTGTCTACGAAGCTCCCTCATTTCCCTTATCGTCTTCTCTCCATCGCTTCCGGAAG 246
Query 187 AGAAAATTCC-AGCCTGAGAGTTGCTGCTGCAACATATCTGAAGAATTTTACCAGAAGGA 245
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 247 TGAAAA-TCCAAGCCTGAAAGTTGCTGCTGCAACATATCTGAAGAATTTTACCAGAAAGA 305
Query 246 GGACTGGGATTGAAGGGATAATCTCAGAAGCCAGCAAGGACTTTAAGGATCAGCTGCTCC 305
| ||||| | |||||||| ||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 306 GCACTGGCACTGAAGGGACAATCTCAGAAGTCAGCAAGGAGTTTAAGGATCAGCTCCTCC 365
Query 306 TAGCTTTGCTTCAGGCAGAGCCTGCACTTCTTAAAGTTTTACTTGAACTGCTCCACATTG 365
|||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 366 TAGCTTTGCTTCAGGCAGAGCCTGCAGTTCTTAAAGTCTTACTTGAACTGCTGCACATTG 425
Query 366 TTGTCATTTCAGAATATGTGAAGAAAAATGCATGGCCTGAACTTGTACCGGAGCTCCGCT 425
|||| | ||||||| ||| | |||||||||||||||| |||||||||||||||| ||||
Sbjct 426 TTGTTGTGTCAGAATTTGTTAGGAAAAATGCATGGCCTAAACTTGTACCGGAGCTGCGCT 485
Query 426 CTGCTATCGAGAACAGTAGATTAATTAGCAGTTCAGACTCTAGCTGGAGTACTGTGAACG 485
||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 486 CTGCTATCGAGAAGAGCAGTTTAATTAGCAGTTCAAACTCTAGCTGGAGTACTGTGAACG 545
Query 486 CTCTGATGGTATTGCTTACCGTTGTAAAGCCTTTTCAGTACTTCCTGCAACCAAAACTTG 545
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CTCTGATGGTATTGCTTACAGTTGTAAAGCCTTTTCAGTACTTCCTGCAACCAAAACTTG 605
Query 546 CAAAGGAGCCAGTACCACAACAGCTAGAGAGTATCACGAAAGAAATTCTAGTACCCTTGG 605
||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 606 CAAAGGAGCCAGTGCCACAACAGCTGGAGAGTATCGCGAGAGAAATTCTAGTACCCTTGG 665
Query 606 TGTCAGTATTACATCGTCTCATTGACAAGGCTTTGACTACCCATGGATGGGATGAACTGG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TGTCAGTATTACATCGTCTCATTGACAAGGCTTTGACTACCCATGGATGGGATGAACTGG 725
Query 666 AATTGGAAAAGACACTCCACATTATTTGCAAATGCCTATACTTTTCAGTGAAGTCTCATA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 726 AATTGGAAAAGACACTCCACATTATTTGCAAATGCCTATACTTTTCAGTGAAGTCCCATA 785
Query 726 TGCCATCTGCTTTGTCACCTCTGCTCGATTCCTTCTGTCGAGATATGATCCGAATTCTGG 785
||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 786 TGCCATCTGCTTTGTCACCTCTGCTCGGTTCCTTCTGTCAAGATATGATCAGAATTCTGG 845
Query 786 ACTCCTTGAGTTTTGACTGGAGTGTAACTCCTTCTGATGGGTACTTGATAAGGTCGAAAG 845
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 846 ACTCCTTGAGTTTTGACTGGAGTGTAACTCCTTCTGATGGGTACTTGATAAGATCGAAAG 905
Query 846 CTGGAAAAAGAAGTTTGCTCCTCTTTGGCACACTCGTCAGCAGACATAGAAAATACTCTG 905
|||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||
Sbjct 906 CTGGAAAAAGAAGTTTGCTCCTCTTTTGCACGCTTGTCAGCCGACATAGAAAATACTCTG 965
Query 906 ACAAATTGGTGCCGGAGATAGTAAACTGCTCAATGAAGATTGTCAAACATAGCTCAAACA 965
| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATAAATTGGTGCCGGAAATAATAAACTGCTCAATGAAGATTGTCAAACATAGCTCAAACA 1025
Query 966 TCAGTAAGCTCGGATGCCTAACTGAGAGAATTATATCACTTGCTTTTGATGTAATTTCAC 1025
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1026 TCGGTAAGCTCGGATGCCTAACTGAGAGAATTATATCACTTGCTTTTGACGTAATTTCAC 1085
Query 1026 GCGTCATGGAAATTGGCCCTGGATGGAGATTACTTTCACCCCATTTTTCCTTTTTGTTGG 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GCGTCATGGAAATTGGCCCTGGATGGAGATTACTTTCACCCCATTTTTCCTTTTTGTTGG 1145
Query 1086 ACTTCGCAATCTTTCCAGCCCTGGTGCTTAATGAGAGGGACATCTCTGAGTGGGAAGAAG 1145
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1146 ACTCCGCAATCTTTCCAGCCCTGGTGCTTAATGAGAGGGACATCTCTGAGTGGGAGGAAG 1205
Query 1146 ATGCAGATGAATTCATAAGGAAAAACCTTCCATCTGAACTAGAAGAAATTTCTGGGTGGA 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATGCAGATGAATTCATAAGGAAAAACCTTCCATCTGAACTAGAAGAAATTTCTGGGTGGA 1265
Query 1206 GGGATGACTTGTTTACAGCCAGGAAAAGCGCTATGAACTTACTTGGTGTCCTTGCCATGT 1265
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1266 GGGATGACTTGTTTACAGCCAGGAAAAGCGCTATGAACTTACTTTGTGTCCTTGCCATGT 1325
Query 1266 CAAAGGGACCACCAGTATCTACTACAAATAAAGCTTCCTCAGCATCATGTAAGCGGAAGA 1325
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 1326 CAAAGGGACCACCAGTATCTACTACAAATACAGCTTCCCCAGCAGCATGTAAGCGGAAGA 1385
Query 1326 AAGGTGAAAAGAACAGAGGAAATAACCAAAGATGCATGGGAGATCTACTGGTGCTTCCAT 1385
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1386 AAGGTGAAAAGAACAGAGGAAATAACCAAAGATGCATGGGTGATCTACTGGTGCTTCCAT 1445
Query 1386 TTTTGTCAAAATTTTATGTGCCTTCTAAGAGTAACAAACTGGATGCTAGTACTTCAGCAG 1445
|||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1446 TTTTGTCAAAATTTCCTGTGCCTTCGAAGAGTTACAAACTGGATGCTAGTACTTCAGCAG 1505
Query 1446 CCTATTTCGGTGTCCTAATGGCATATGGTAGCCTGGAAGAGTTTATCCAAGAACAAAATC 1505
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1506 CCTATTTCGGTGTCCTAATGGCATATGGTAGCCTGCAAGAGTTTATCCAAGAACAAAATC 1565
Query 1506 CTGAGTATGTGGCATCTTTTGTCCGTACCCGTGTGCTACCGATTTATTCTACACCTGATT 1565
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1566 CTGAGTATGTGGCATCTTTTGTCCGTACCCGTGTGCTACCCATTTATTCTACACCTGATT 1625
Query 1566 GCTCACCTTACTTGGTTGCATCTGCAAACTGGGTACTTGGAGAGCTTGCGTCTTGCCTAC 1625
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1626 GCTCACCTTACTTGGTTGCATCTGCAAATTGGGTACTTGGAGAGCTTGCGTCTTGCCTAC 1685
Query 1626 CTGAGGAAATGAATGCAGATGTTTTTTCTTCCCTGCTGAAGGCATTAGCAATGCCAGATC 1685
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1686 CTGAGGAGATGAATGCAGATGTTTTTTCTTCCCTACTAAAGGCATTAGCAATGCCAGATC 1745
Query 1686 AGGTGGAGATTTCTTGTTACCCAGTGCGTTTTTCAGCTGCTGGTGGAATAGGTTCACTGC 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1746 AGGTGGAGATTTCTTGTTACCCAGTGCGTTTTTCAGCTGCTGGTGGAATAGGTTCCCTAC 1805
Query 1746 TCGAAAATGAGTACCAACCACCTGAATGGTTGCCGTTTCTTCAGATTATTACTGGTAAGA 1805
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1806 TCGAAAATGAGTACCAACCACCTGAATTGTTGCCGCTTCTTCAGTTTATTACTGGTAAGA 1865
Query 1806 TTGGTAATGAGGAAGACGAGGATAGCATGTTGTTTCAGCTTCTCAAATCCGTGGTCGAGT 1865
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1866 TTGGTAATGAGGAAGACGAGGACAGCATGTTGTTTCAGCTTCTCAAATCCGTGGTCGAGT 1925
Query 1866 CGGGAAATCAAGATATTGCCACGCATATTCCGTACATTGTCTCTTCGCTAGTTAGTAATA 1925
||||||||||||||||||| | ||||||||| |||||||||||||| ||||| |||||||
Sbjct 1926 CGGGAAATCAAGATATTGCAATGCATATTCCTTACATTGTCTCTTCTCTAGTAAGTAATA 1985
Query 1926 TGTTGAAGTTTATGCATCCAAGTGAAGATCCATGGTCTCAGGCTATTCTAGGTGGCCTTG 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 TGTTGAAGTTTATGCATCCAAGTGAAGATCCATGGTCTCAGGCTATTCTAGGTGGCCTTG 2045
Query 1986 AGACATTAGTAGCGATGGCTCAGACTTATGAAAGCTCTAAGCCTGAAGCGGATGAGGAGA 2045
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 AGACATTAGCAGCGATGACTCAGACTTATGAAAGCTCTAAGCCTGAAGCGGATGAGGAGA 2105
Query 2046 ATAATCAGGCGACTGAAATATGGCTAACTGGTCAATGCACCATCAGCAAAGCTTTGTCAG 2105
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2106 ATAATCAGGCGACTGAAATATGGCTAACTGGTCAAGGCACCATCAGCAAAGCTTTGTCAG 2165
Query 2106 CACTTTTACAGCACGCATGGCTGGCAACAGATGTTCCTCCGACTTCAAGCATAGATCATT 2165
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2166 CACTTTTACAGCATGCATGGCTGGCAACAGATGTGCCTCCGACTTCATGCATAGATCATT 2225
Query 2166 TGTCGACGATGTTGCGGTTCATTGTGATTGCCTGC-ACTAATTGCAATGTATTTGTGGAG 2224
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2226 TGTCGACGATGTTGCGGTTCATTGTGATTGC-TGCTACTAATTGCAATGTATTTGTGGAG 2284
Query 2225 CTCAGATTAAGTGAATTACTCATAGTTTGGGCCGATATTCTTGCTAGTTGGAATGGTTGG 2284
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285 CTCAGATTAACTGATTTACTCATAGTTTGGGCCGATATTCTTGCTAGTTGGAATGGTTGG 2344
Query 2285 GAAGAGTCGGAGGACTTATCGGTTTTTGACTGTATAGAAGAAGTTGTGGGTATAAACAAC 2344
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2345 GAAGAGTCGGAGGACTTATCAGTTTTTGACTGTATAGAAGAAGTTGTGGGTATAAACAAT 2404
Query 2345 AAATATGGTTTTAGGAGTTTCCTTTTCAGAGATATGCCATCCCCTCCAGCCATGCCAGTC 2404
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2405 AAATATGGTTTTAGGAGTTTCCTTTTCAGAGATATACCATCCCCTCCAGCCATGCCAGTC 2464
Query 2405 CGTCCGCGATCTGTTGTTGAATCCATTGGTTCATTTGTCAGCAAAGCCATACTTGAGTAT 2464
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2465 CGTCCACGATCTGTTGTAGAATCCATTGGTTCATTTGTCAGCAAAGCCATACTTGAGTAT 2524
Query 2465 CCGTCGGCCACAAGGAGGGCTTGTTCTTGTGTCCACACATTATTATATGTACCCAACTAC 2524
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2525 CCGTCGGCCACAAGGAGGGCTTGTTCTTGTGTCCACACATTATTATATGTACCCGACTAC 2584
Query 2525 TCATCTGACGTCGAAGGGGTGGGGAAATCATTGGCGATGGTCTTCACTGAATCAGCCTTT 2584
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2585 TCATCTGACATCGAAGGGGTGGGGAAATCATTGGCGATGGTCTTCGCTGAATCAGCCTTT 2644
Query 2585 TCTCATTTTCTAGCATTGCGTGAGAAACCTTGTCCATTGTGGAGGCCTCTATTATTGGCA 2644
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2645 TCTCATTTTTTAGCATTGCGTGAGAAACCTTGTACATTGTGGAGGCCTCTATTACTGGCA 2704
Query 2645 ATATCATCATGCTATATCTCCTATTCCGATATTGTGGAAGGCGTTTTAGAGAAAGTGATA 2704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2705 ATATCATCATGCTATATCTCCTATTCCGATATTGTGGAAGGCGTTTTAGAGAAAGTGATA 2764
Query 2705 TCTGGAGGTTTCGAGTTATGGCTATCTTCATTGGCTTTTTCATACTCGCTTATGTGTGAT 2764
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2765 TCTGGAGGTTTCGAGTTATGGGTATCTTCATTGGCTTTTTCATACTCGCTTACGTGTGAT 2824
Query 2765 GCCAGTCCATCAGTAGTATCGGAAG-TAAAA--C-TATA-T----GTGATGACGGTAGTA 2815
| |||||||||||||||||||||| ||||| | | | | ||||||||| |||||
Sbjct 2825 GACAGTCCATCAGTAGTATCGGAAACTAAAAGACCTCTTGTTTCAGTGATGACGCTAGTA 2884
Query 2816 AAGGTGATCGAGCATCTTTTAGATGTAAGGCACGGGAATGCAACTGATGATTTGGCAAGG 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2885 AAGGTGATCGAGCATCTTTTAGATGTAAGGCACGGGAATGCAACTGATGATTTGGCAAGG 2944
Query 2876 AAGTGCTTTGTTTCATTGATGGAGGCTTCTCGGAGGCTAAAGGAAGTGAACGAAGAAACA 2935
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2945 AAGTGCTTTGTTTCATTGATGGAGGCTTCTCGAAGGCTAAAGGAAGTGAACGAAGAAACA 3004
Query 2936 GACGATGATGAAGATGATGGAGAACCCGGAGAAGAAGAGACAGAATCTGAAGAAACTGAT 2995
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3005 GACGATGATGAAGATGATGGAGAACCTGGAGAAGAAGAGACAGAATCTGAAGAAACTGAT 3064
Query 2996 TCAAATGACGAGGATTCCGAAAGCGATGACGAGTGTGAAGAAACGGAGGAAGAGTTTCTA 3055
|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 3065 TCAAATGACGAGGATTCCGAGAGCGATGA-G--TGTGAAGAAACGGAGGAAGAGTTTCTA 3121
Query 3056 GAAAGGTATGCTAAAGCTGCAGCAGAATTGGAGGATAGTGAAGTAATTGAAGAGGCGGAT 3115
||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3122 GAAAGGTATGCCAAAGTTGCAGCAGAATTGGAGGATAGTGAAGTTATTGAAGAGGCGGAT 3181
Query 3116 GAAGAAGATGATGACCATGAGATTGATTTGGGTTCTCTGAATGAAATCGATCCGCAGAAA 3175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3182 GAAGAAGATGATGACCATGAGATTGATTTGGGTTCTCTGAATGAAATCGATCCGCAGAAA 3241
Query 3176 CTGGTGTTAACATTAATGGAGAAGCATCACGAGAAAGTAATAAAACTCGTACCCTCTGAA 3235
||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3242 CTGGTGTTATCATTAATGGAGAAGCATCACCAGAAAGTAATAAATCTCGTACCCTCTGAA 3301
Query 3236 G-TAATCTCAACCTTTCTCAATTCTTTTCCTGTATACACAAGTCTCTTCTCTAAGTGCCT 3294
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3302 GCTA-TCTCAACCTTTCTCAATTCTTTTCCTATATACACAAGTCTCTTCTCTAAGTGCCT 3360
Query 3295 CTAAACATTAAACTACAGTTTT 3316
||||||||||| ||||||||||
Sbjct 3361 CTAAACATTAAGCTACAGTTTT 3382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165099409413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5