BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929589
Length=346
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17360.1 | Symbols: POK1 | phragmoplast orienting kinesin 1 ... 108 4e-23
> AT3G17360.1 | Symbols: POK1 | phragmoplast orienting kinesin
1 | chr3:5936108-5946466 FORWARD LENGTH=6462
Length=6462
Score = 108 bits (58), Expect = 4e-23
Identities = 73/79 (92%), Gaps = 6/79 (8%)
Strand=Plus/Minus
Query 274 CCAATTGCAGCAACATGTTATATGCATTCTTATACACAACAATTCCAATTTAA--CAC-- 329
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 6462 CCAATTGCAGCAACATGTTATATGCATTCTTATACACAACAATTCCAATTTAAGACACTC 6403
Query 330 ACACA-AAAA-GTTAACCA 346
||||| |||| ||||||||
Sbjct 6402 ACACACAAAAAGTTAACCA 6384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16186215178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5