BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929590
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17365.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 592 2e-168
> AT3G17365.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:5946987-5948868
REVERSE LENGTH=1093
Length=1093
Score = 592 bits (320), Expect = 2e-168
Identities = 348/362 (96%), Gaps = 0/362 (0%)
Strand=Plus/Plus
Query 21 ATGGCTACAGAGACATCGACGCAATCTTACAGTGAGAAATGGTATTGGGACGAGCGTTAC 80
|||||||||||| || | |||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 103 ATGGCTACAGAGGCACCAACGCAATCTTACAGCGAGCAATGGTATTGGGACGATCGTTAC 162
Query 81 ACGAATGAATCTGAACCGTTTGATTGGTACCAGAAGTATTCATCTTTAGCTCCTCTCATT 140
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 163 AAGAATGAATCTGAACCGTTTGATTGGTACCAGAAGTATTCACCTTTAGCTCCTCTCATC 222
Query 141 AATCTCTATGTTCCTCACCGTAATCAACGAGCCCTCGTCATTGGCTGTGGAAACTCAGCG 200
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 223 AATCTCTATGTTCCTCAACGTAATCAACGAGTCCTCGTCATTGGCTGTGGAAACTCAGCG 282
Query 201 TTTAGCGAAGGAATGGTGGATGATGGATATGAAGATGTAGTCAATATTGATATATCATCA 260
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 283 TTTAGCGAAGGAATGGTGGATGATGGATACGAAGATGTAGTCAGTATTGATATATCATCA 342
Query 261 GTGGTGATTGATACCATGATTAAGAAATACTCTGATCGTCCTCAGCTCAAATATTTGAAG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GTGGTGATTGATACCATGATTAAGAAATACTCTGATCGTCCTCAGCTCAAATATTTGAAG 402
Query 321 ATGGATGTGCGTGATATGAAGGCATTTGAAGATGCTTCTTTTGATGCTGTTATCGATAAA 380
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 403 ATGGATGTGCGTGATATGAAAGCATTTGAAGATGCTTCTTTTGATGCTGTTATCGATAAA 462
Query 381 GG 382
||
Sbjct 463 GG 464
Score = 501 bits (271), Expect = 4e-141
Identities = 361/400 (90%), Gaps = 23/400 (6%)
Strand=Plus/Plus
Query 380 AGGAACCTTAGACTCTA-TTT--TG-TGTGGGAGCAATTCCAGGCAATACTCAACACAAA 435
||||||||||||||| | ||| || |||||||| ||||| |||||||||||||||||||
Sbjct 556 AGGAACCTTAGACTCCATTTTGGTGATGTGGGAGTAATTCGAGGCAATACTCAACACAAA 615
Query 436 TGCTTGAAGAGG--T----TTG--G--------AGGGTCCTCAAGGATAAAGGAGTCTAT 479
|||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct 616 TGCTTGAAGAGGTTTGGAGTTGATGAAACCTATAGGGTCCTCAAGGATAAAGGAGTCTAT 675
Query 480 ATCCTGATTACATATGGAGCTCCGATTTACCGTCTTCGTCTGTTTAAAGAATCATGCTCT 539
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 676 ATCCTGATTACATATGGTGCTCCGATTTACCGTCTTCGCCTGTTTAAAGAATCATGCTCT 735
Query 540 TGGACAACGAAACTCCATGTTATAGACAAAAGTTTAACTGATCAACCGTTAGAAACCCCA 599
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 736 TGGACAACCAAACTCCATGTTATAGACAAAAGTTTAACCGATCAACCGTTAGACACCCCA 795
Query 600 AAATGGGAACTGACAAAACCACTTCCTCTAGATGCTGAGGGAAGTTCAGTGGAATCTGCG 659
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 796 AAATGGGAACTGACAAAACCTCTTCCTCTAGATGCTGATGGAAGTTCAGTGGAATCTGCG 855
Query 660 ATAGGCAAAAGCCCTGATGTCCATTACATCTATGTCTGCATTAAGGATGAGTCGTT-GAA 718
|||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 856 ATAGGCAAAAACCCTGATGTCCATTACATCTACGTCTGTATTAAGGATGAGTC-TTCGAA 914
Query 719 GATGGAGGCAGACGCAGCATGACCTCATGGGAACC-CTTT 757
|||||||||||| ||||||||| ||||||||||| ||||
Sbjct 915 GATGGAGGCAGATGCAGCATGAAGTCATGGGAACCTCTTT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5