BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929600
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17460.1 | Symbols: | PHD finger family protein | chr3:5976... 878 0.0
> AT3G17460.1 | Symbols: | PHD finger family protein | chr3:5976949-5977545
REVERSE LENGTH=597
Length=597
Score = 878 bits (475), Expect = 0.0
Identities = 559/600 (93%), Gaps = 3/600 (1%)
Strand=Plus/Plus
Query 25 ATGAATTCGGAACAGAATCAACGCGAATGCATAGTATGCCGTGAAAAAGAGCCGTCGTTC 84
|||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAATCCGGAACAGAAACAGCGCGAATGCATAGTCTGCCGTGAAAAAGAGCCGTCGTTC 60
Query 85 ATCCACACCGTCGGCAAAACCGGCGTTTTCCGGCGACTCTGCACCGATTGTTTGCTCAAA 144
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ATCCACACCGTCATCAAAACCGGCGCTTTCCGGCGACTCTGCACCGATTGTTTGCTCAAA 120
Query 145 GAATATCGTGAGCTCTTTTGCTCTGTTTGTTTCAATCTCTTCGACAACGCCGTTCCTCCA 204
|| || || || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTACCGAGAACACTTTTGCTCTGTTTGTTTCAATCTCTTCGACAACGCCGTTCCTCCA 180
Query 205 CAAGCTCGTATCATCTGCGTCAATTGCCCTTCAAGCACCCACCTTTCTTGCTCTTCTCAG 264
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 181 CAAGCTCGTATCATCTGCGTCAATTGCCCATCAAGCACCCACCTTTCTTGCTCAACTCAG 240
Query 265 CCGCCGTCTTCCTCCACCGCCGCATCTTCATCCTCCTCCGCTCCACCACCAGCTTCTTCC 324
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CCGCCGTCTTCCTCC---GCCGCATCTTCCTCCTCCTCCGCTCCACCACCAGCTTCTTCC 297
Query 325 TTCACATGCCTGCCATGTTCTAACCCCAATTTCACCTTCTTCCCCAAATCTCGTGTCAAT 384
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 TTCACATGCCAGCCATGTTCTAACCCCAATTTCACCTTCTTCCCCAAATCTCGAGTCAAT 357
Query 385 GATGACGTCCCTGAAGAAACGCCTCTCAGTGCGGAATCGGCCATGGCTCTTGTCGCAGCT 444
|| |||||||| || ||||||||||||| | || ||||||| ||||||||||||||||||
Sbjct 358 GAAGACGTCCCCGATGAAACGCCTCTCACTCCGAAATCGGCAATGGCTCTTGTCGCAGCT 417
Query 445 GCAAAGATCTCGGTGGCTAATATGAATAACGCGGTGGCTCTGTTAAAAGATGAAGCTCGT 504
| ||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
Sbjct 418 GGAAATATCTCGGTGGCTAATATGAATAAAGCGGTGGCTCTGTTAAAGGAAGAAGCTCTT 477
Query 505 AAGAAGATCATAGCAGCTAAAGCGGCCAAGTTGAGAGCTAAAGGTGCATTGGCGAATCTT 564
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 478 AAGAAGATCATAGCAGCTAAAACGGCCAAGTTGAGAGCTAAAGGTGCATTGACGAATCTT 537
Query 565 CAGGATATTGTTATTCAAAAGAATAAAGCCACCGGCAAGAGGAAGGAAGATGAACGCTGA 624
|||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||||
Sbjct 538 CAGGATATTGTTATTCGACAGAGTAAGGTCACCGGCAAGAGGAAGGAAGATGAACGCTGA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31094936993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5