BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929603

Length=932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17500.1 | Symbols:  | F-box family protein | chr3:5986685-5...   174    1e-42
  AT3G17265.1 | Symbols:  | F-box and associated interaction doma...   130    3e-29
  AT4G17200.1 | Symbols:  | F-box and associated interaction doma...  71.3    2e-11
  AT5G42460.1 | Symbols:  | F-box and associated interaction doma...  58.4    1e-07
  AT2G17477.1 | Symbols:  | Pseudogene of AT3G22350; F-box family...  58.4    1e-07
  AT2G17830.1 | Symbols:  | F-box and associated interaction doma...  54.7    2e-06


> AT3G17500.1 | Symbols:  | F-box family protein | chr3:5986685-5988498 
FORWARD LENGTH=1317
Length=1317

 Score =  174 bits (94),  Expect = 1e-42
 Identities = 155/183 (85%), Gaps = 10/183 (5%)
 Strand=Plus/Plus

Query  563   CAACTCTCATTGGTACTTCAGCGCGTTGTCGTGCATCAAAGGTGGATGTATGGATGACTA  622
             ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| ||| 
Sbjct  1123  CAACTATCATTGGTACTTCA--GCGTTGTCGTGCATCAAAGGTGGATGTATGGATAACTG  1180

Query  623   ATAAGATTGATACTAAACAAGTGGTGTGGAGCAAATTTTTTACGGTAGATGTATACAT-G  681
             ||||||||||||||||| |||||  |||||||||||| ||||||||||||||| |||| |
Sbjct  1181  ATAAGATTGATACTAAAGAAGTGCAGTGGAGCAAATTCTTTACGGTAGATGTAGACATTG  1240

Query  682   C-G-TCGTTATTTTTTCTCGTTTTG-CGTGAGTTTCGTCATCGACAAGGAGaaaaaaaTG  738
               | ||||  | | || |||| | | |   |||||| |||||||||||||||||  ||||
Sbjct  1241  GTGGTCGTGCTATGTTATCGTAT-GAC---AGTTTCTTCATCGACAAGGAGAAAGGAATG  1296

Query  739   GCC  741
             |||
Sbjct  1297  GCC  1299


> AT3G17265.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:5899515-5900637 REVERSE LENGTH=1038
Length=1038

 Score =  130 bits (70),  Expect = 3e-29
 Identities = 88/96 (92%), Gaps = 3/96 (3%)
 Strand=Plus/Plus

Query  136  ATCTTTCACTGCGACGGTTTATTATTGTGCACCACCAAGGAC-A-A-TAGTCTCGTGGTT  192
            |||| ||||||||| ||||||||||||||| | ||||||||| | | ||| |||||||||
Sbjct  322  ATCTCTCACTGCGATGGTTTATTATTGTGCGCTACCAAGGACAAGACTAGACTCGTGGTT  381

Query  193  TGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAA  228
            ||||||||||||||||||||||||||||||||||||
Sbjct  382  TGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAA  417


> AT4G17200.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:9651108-9652253 FORWARD LENGTH=1146
Length=1146

 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  364  GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCT  401
            ||||||||||||||||||||||||||||||||||||||
Sbjct  490  GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCT  527


> AT5G42460.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr5:16979773-16981115 FORWARD LENGTH=1343
Length=1343

 Score = 58.4 bits (31),  Expect = 1e-07
 Identities = 44/50 (88%), Gaps = 2/50 (4%)
 Strand=Plus/Plus

Query  28  ATGTCAGATCTTCCACGGGATTTGTTAGAGGATATACTCTA-TAGGATTC  76
           |||||||||||||||||||||||||||| ||| || ||| | |||| |||
Sbjct  10  ATGTCAGATCTTCCACGGGATTTGTTAGCGGAGATTCTC-AGTAGGGTTC  58


> AT2G17477.1 | Symbols:  | Pseudogene of AT3G22350; F-box family 
protein | chr2:7589808-7590264 FORWARD LENGTH=457
Length=457

 Score = 58.4 bits (31),  Expect = 1e-07
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  504  CTTACTCAGTTTTGATTTTACAACCGAGAGATTT  537
            ||||| ||||||||||||||||||||||||||||
Sbjct  133  CTTACACAGTTTTGATTTTACAACCGAGAGATTT  166


> AT2G17830.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr2:7754210-7755604 FORWARD LENGTH=1395
Length=1395

 Score = 54.7 bits (29),  Expect = 2e-06
 Identities = 37/40 (93%), Gaps = 3/40 (8%)
 Strand=Plus/Plus

Query  19  ACAATGGCG---ATGTCAGATCTTCCACGGGATTTGTTAG  55
           |||||||||   ||||||||||||||||||||||||||||
Sbjct  49  ACAATGGCGATAATGTCAGATCTTCCACGGGATTTGTTAG  88



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45562371329


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5