BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929605
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17520.1 | Symbols: | Late embryogenesis abundant protein (... 1367 0.0
> AT3G17520.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr3:5999289-6000370 REVERSE LENGTH=1082
Length=1082
Score = 1367 bits (740), Expect = 0.0
Identities = 867/929 (93%), Gaps = 5/929 (1%)
Strand=Plus/Plus
Query 14 AGTGTAATAAAAATGGGGGTAACAGAGAGAAGAGTGTACGGTTTGGTTATGGTATCTTTG 73
||||||| |||||| ||||| | |||| ||| ||||||||||||||||||||||||||||
Sbjct 1 AGTGTAACAAAAAT-GGGGTTAGAGAG-GAA-AGTGTACGGTTTGGTTATGGTATCTTTG 57
Query 74 GTACTTATGGCTATTGCAACGATGTGTTGTGTCCAAGCTACGATCGAGGAAGAAGCGGCT 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTACTTATGGCTATTGCAACGATGTGTTGTGTCCAAGCTACGATCGAGGAAGAAGCGGCT 117
Query 134 AAGGATGAATCATGGACTGATTGGGCCAAGGAGAAGATCGGTCTCAAGCACGAAGACAAC 193
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 AAGGATGAATCATGGACTGATTGGGCAAAGGAGAAGATCGGTCTCAAGCACGAAGACAAC 177
Query 194 ATCCAACCCACTCATACCACCACAACTGTCCAAGACGACGCTTGGAGAGCGAGTGAAAAA 253
|||||||||||||| |||||||| || || |||||||||||||||||||||||| |||||
Sbjct 178 ATCCAACCCACTCACACCACCACGACCGTTCAAGACGACGCTTGGAGAGCGAGTCAAAAA 237
Query 254 GCCGAGGACGCAAAAGAGGCGGTTAAACGCAAAGCAGAGGAAGCGGTTGGAGCCGCAAAG 313
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 238 GCCGAGGACGCAAAGGAGGCGGCTAAACGCAAAGCAGAGGAAGCGGTTGGAGCCGCGAAG 297
Query 314 GAGAAAGTGGGATCGGCTTACGAGACAGCTAAATCGAAAGCTG-GCGAGGGTTTGGGTTC 372
||||||| ||| ||||| |||||||||||||||||||||| || | |||||||||| |||
Sbjct 298 GAGAAAGCGGGTTCGGCATACGAGACAGCTAAATCGAAAGTTGAG-GAGGGTTTGGCTTC 356
Query 373 CCTGAAAGACAAGGCCTCGCAGGGGTACGACTCAGCTGGTCAAGTTAAGGATGACGTGTC 432
| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 357 TGTAAAAGACAAGGCCTCGCAGAGTTACGACTCAGCTGGTCAAGTTAAGGATGACGTGTC 416
Query 433 TCACAAGTCAAAGCAAGTTAAAGATAGCTTGTCCGGAGATGAAAACGATGAGTCCTGGAC 492
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 417 TCACAAGTCAAAGCAAGTTAAAGATAGCTTGTCGGGAGACGAAAACGATGAGTCTTGGAC 476
Query 493 TGATTGGGCCAAAGAGAAAATCGGAATCAAGAATGAAGACATCAATAGCCCTAACTTGGG 552
| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 477 CGGTTGGGCCAAAGAGAAAATCGGAATCAAGAACGAAGACATCAACAGCCCTAACTTGGG 536
Query 553 AGAGACAGTGTCGGAGAAGGCTAAAGACGCTAAGGACGCTGCTAAACGCAAAGCAGGAGA 612
|||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 537 AGAGACGGTATCTGAGAAGGCAAAAGAAGCTAAGGAAGCGGCTAAACGCAAAGCAGGAGA 596
Query 613 TGCTAAGGAGAAGTTGGAGGAAACGGTTGAGGCCGCGAAAGAGAAGGCGAGCGATATGAC 672
|||||| |||||||||| ||| || |||||| | ||||||||||||||||||||||||||
Sbjct 597 TGCTAAAGAGAAGTTGGCGGAGACAGTTGAGACGGCGAAAGAGAAGGCGAGCGATATGAC 656
Query 673 GAGTGCAGCTAAGGAGAAGGCGGAGACGGTGAAGAAGGAAGCagagagagagagTAAGAG 732
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 657 GAGTGCAGCTAAGGAGAAGGCGGAGAAGTTGAAGGAGGAAGCAGAGAGAGAGAGTAAGAG 716
Query 733 TGCGAAGGAGACAAGTAAGGAAAGCTACGAGACTGCGAAATCTAAAGCCGATGAGACTTT 792
||||||||||| || ||| ||||| || |||||||| ||||| |||||||||||||||||
Sbjct 717 TGCGAAGGAGAAAATTAAAGAAAGTTATGAGACTGCAAAATCAAAAGCCGATGAGACTTT 776
Query 793 GGAGTCTGCAAAAGATAAGGCGGCGCAGAGTTACGACTCAGCTGCGCGTAAATCGGAGGA 852
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 AGAGTCCGCGAAAGATAAGGCGTCGCAGAGTTACGACTCAGCTGCGCGTAAATCGGAGGA 836
Query 853 AGCTAAAGATACCGTGTCTCACAAGTCAAAACGTGTTAAAGAGAGCTTGACCGACGATGA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGCTAAAGATACCGTGTCTCACAAGTCAAAACGTGTTAAAGAGAGCTTGACCGACGATGA 896
Query 913 TGCTGAGCTCTAAGAAGTTGGGAGAAACT 941
||||||||||| |||||||||||||||||
Sbjct 897 TGCTGAGCTCTGAGAAGTTGGGAGAAACT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5