BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929608
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17550.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1386 0.0
AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 346 2e-94
AT3G19600.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 196 2e-49
> AT3G17550.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr3:6005114-6006004 REVERSE LENGTH=891
Length=891
Score = 1386 bits (750), Expect = 0.0
Identities = 844/891 (95%), Gaps = 0/891 (0%)
Strand=Plus/Plus
Query 21 ATGTTTGCAGTTGAAAATATTTCTATGGAAGTCGAACCGGCGATCAACGAGTCGTCATCG 80
||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 1 ATGTTTGCAGTTGAAAACATTTCTATGGAATTCGAACCGGCGATCAACGAATCGTCTTCG 60
Query 81 TCACTGTCGTCATCTGGTAGTAGCTGCGGTCACTGGTATGTTCGTTACGGAGTCTGCATC 140
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTTTCGTCATCTCGTAGTAGCTGCGGTCACTGGTATGTTCGTTACGGAGTCTGCATC 120
Query 141 GCCTGTAAATCAACGGTAAATAAACGCCAAGGCCGAGCATTCGATTATCTCGTCCAAGGT 200
|| |||||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||||
Sbjct 121 GCTTGTAAATCGACGGTAAACAAACGCCATGGCAGAGCATTCGATTATCTCGTTCAAGGT 180
Query 201 TTGCAGCTAAGCCACGAAGCAGCAGCGTTCACGAAGCGCTTTACAACGGAATTCTATTGT 260
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct 181 TTGCAGCTAAGCCACGAAGCAGCAGCGTTTACGAAGCGCTTTACTACGCAATTCTATTGT 240
Query 261 CTCAATGAGAAGAAGCTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACTCTATT 320
||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 241 CTCAACGAGAAGAAGCTAAACCTTGTACTCGACTTGGACCACACGCTTCTCCACTCTATT 300
Query 321 AGGGTTTCAATTCTCTCAGAAACAGAGAGGTATCTAATCGAAGAAGCGTGTTCAACTACA 380
||||||||| |||| || |||||||||| || ||||||||||||||||||||||||||||
Sbjct 301 AGGGTTTCACTTCTTTCCGAAACAGAGAAGTGTCTAATCGAAGAAGCGTGTTCAACTACA 360
Query 381 AGGGAAGATCTGTGGAAGTTGGACATCGATTACTTGACAAAGCTACGCCCTTTTGTTCAC 440
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 361 AGGGAAGATCTGTGGAAGTTGGACAGCGATTACTTGACAAAGCTACGGCCTTTTGTTCAC 420
Query 441 GAGTTTTTGAAGGAAGCCAACGAAATGTTCACAATGTATGTTTATACAATGGGTACTAGA 500
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTTTTTGAAGGAAGCCAACGAGTTGTTCACAATGTATGTTTATACAATGGGTACTAGA 480
Query 501 GTATACGCCGAATCATTGTTGAAGCTGATTGATCCCAAGAGAATTTATTTTGGGGATCGA 560
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 481 GTATACGCCGAATCCTTGTTGAAGCTGATTGATCCCAAGAGAATCTACTTTGGTGATAGA 540
Query 561 GTGATAACAAGAGACGAGAGTCCTTATGTGAAGACACTTGATTTGGTTTTGGCTGATGAG 620
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct 541 GTGATAACAAGAGACGAGTCTCCTTACGTGAAGACGCTTGATTTGGTTTTGGCTGAGGAG 600
Query 621 CGTGGAGTGGTCATTGTGGATGATACGCGTGATGTTTGGACCCATCACAAGAGTAACCTA 680
||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 601 CGTGGAGTGGTTATTGTGGATGATACGAGTGATGTTTGGACGCATCACAAGAGTAACCTA 660
Query 681 GTAGAGATTAACGAGTACCACTATTTCAGAGTCAATGGCCCAGAAGAGTCAAAGTCTTAC 740
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 661 GTAGAGATTAACGAGTACCACTTTTTCAGAGTCAATGGCCCAGAAGAGTCAAATTCTTAC 720
Query 741 ACGGAGGAGAAGAGAGACGAGAGTAAAAACAGTGGTGGATTGGCCAATGTTCTGAAATTA 800
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 ACGGAGGAGAAGAGAGACGAGAGTAAAAACAATGGTGGATTGGCCAATGTTCTGAAATTA 780
Query 801 CTTAAGGAAGTTCACTATGGATTCTTCAGAGTCAAGGAAGAGTTAGAGTCACAAGACGTG 860
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCAAGGAAGTTCACTATGGATTCTTCAGAGTCAAGGAAGAGTTAGAGTCACAAGACGTG 840
Query 861 AGGTTTATGCTACAAGAAATAGATTTCAAACTTCTCACAAAAGACGCCTGA 911
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGGTTTTTGCTACAAGAAATAGATTTCAAACTTCTCACAAAAGACGCCTGA 891
> AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:7033657-7034874 REVERSE LENGTH=1218
Length=1218
Score = 346 bits (187), Expect = 2e-94
Identities = 611/807 (76%), Gaps = 64/807 (8%)
Strand=Plus/Plus
Query 104 CTGCGGTCACTGGTAT-GTTCGTTACGGAGTCTGCATCG--CCTGTAAATCAACGGTAAA 160
||||||||||| | | || ||||||||| ||||| | | ||| | ||| |||||| |
Sbjct 57 CTGCGGTCACTTCT-TCGTCCGTTACGGAATCTGC-T-GTAACTGCAGATCGACGGTAGA 113
Query 161 TAAACG-CCAAGGCCGAGCATTCGATTATCTCGTCCAAGGTTTGCAGCTAAGCCACGAAG 219
| | | | | |||||||||||||||||||||||||| || || || ||||||| |||
Sbjct 114 CAGA-GACTACGGCCGAGCATTCGATTATCTCGTCCATGGGTTACAATTAAGCCATAAAG 172
Query 220 CAGCAGC-GTTCACGAAGCGCTTTACAACGGAATTCTATTGTCTCAATGAGAAG-AAGCT 277
| | || ||| || ||| || |||| || || || ||| || || ||| || |||||
Sbjct 173 CCGTTGCGGTT-ACAAAGAGCCTTACTACACAACTCGCTTGCCTTAACGAG-AGAAAGCT 230
Query 278 TCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACTCTATTAGGGTTTCAATTCTCTC 337
||| || ||||||||||||||||||||||||||||| ||||||| | ||||| || ||
Sbjct 231 TCATCTAGTCCTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTCACGGCTTTC 290
Query 338 AGAAACAGAGAGGTATCTAATCGAAGAAGCGTGTTCA-ACTACAAGGGAAGATCTGTGGA 396
||| ||||| ||||||| | | ||| | | || | | | |||||||||| ||||
Sbjct 291 CGAAGGAGAGAAGTATCTATTGGGAGA-G--T---CAGATTTTA-GGGAAGATCTTTGGA 343
Query 397 -AGTTGGACATCGAT-TACTTGACAAAGCTACGCCCTTTTGTTCACGAGTTTTTGAAGGA 454
| ||| ||| || | || || ||| || || |||||||||||||||||| |||| ||
Sbjct 344 CACTTG-ACAGAGAGATGCT-GATAAAACTTCGACCTTTTGTTCACGAGTTTCTGAAAGA 401
Query 455 AGCCAACGAAATGTTCACAATGTATGTTTATACAATGGGTACTAGAGTA-TACGC-CGAA 512
||||||||| || ||| | |||||||| || || ||||| | | | | | ||||| | |
Sbjct 402 AGCCAACGAGATTTTCTCCATGTATGTCTACACGATGGGGAATCGTG-ACTACGCTC-AG 459
Query 513 TCAT-TGTTGAAGCTG-ATTGATCCCAAGAGAATT-TATTTTGGGGATCGAGTGATAACA 569
| | || |||| || |||||||| |||| || | || ||||||||| |||| || ||
Sbjct 460 GC-TGTGCTGAAA-TGGATTGATCCGAAGA-AAGTATACTTTGGGGATAGAGTCATTACC 516
Query 570 AGAGACGAGAGTCCTTATGT-GAAGACACTTGAT-TTGGTTTTGGCTGATGAGCGTGGAG 627
|||||||||||| || | | |||||| |||||| ||| | |||||||||||| ||||||
Sbjct 517 AGAGACGAGAGTGGTTTT-TCGAAGACGCTTGATCTTG-TGTTGGCTGATGAGTGTGGAG 574
Query 628 TGGTCATTGTGGATGATACGCGTGATGTTTGGACCC-ATCACAAGAGTAACCTAG-TAGA 685
| || ||||||||||| || ||| |||||||| || |||| |||| || || | || |
Sbjct 575 TTGTGATTGTGGATGACACTCGTCATGTTTGG-CCTGATCATGAGAGGAATCT-GCTACA 632
Query 686 GATTAACGAGTACCACT-ATTTCAGAG-TCAATGGCCCA-GA-A-G-AGTCAAAGTCTTA 739
||||| | ||||| | | | ||||||| | | | | | | || | | ||||||| |||||
Sbjct 633 GATTACCAAGTAC-AGTTACTTCAGAGATTA-TAGTC-ATGATAAGGAGTCAAAATCTTA 689
Query 740 CACGGAGGAGAAGAGAGACGAGAGTAAAAAC-AGTGG-TGGATTGGCCAATGTTCTGAAA 797
| | |||||||||||||||||||||| ||| || || | |||||| |||||| |||||
Sbjct 690 CGCAGAGGAGAAGAGAGACGAGAGTAGGAACCAG-GGATC-ATTGGCGAATGTTTTGAAA 747
Query 798 -TTACTTAAGGAAGTTCACTATGGATTCTTCAGAGTC--AAG-GAAGAGTTAGAGTCACA 853
|| || ||||| |||||| | | ||| ||||||| | || || || ||||| ||| |
Sbjct 748 GTT-CTCAAGGATGTTCACCAAGAATTTTTCAGAGGCGGAATTGAGGAATTAGATTCA-A 805
Query 854 AG-ACGTGAGGTT-TATGCTACAAGAA 878
|| |||||||| | | |||||||||||
Sbjct 806 AGGACGTGAGGCTGT-TGCTACAAGAA 831
> AT3G19600.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr3:6810669-6811742 REVERSE LENGTH=950
Length=950
Score = 196 bits (106), Expect = 2e-49
Identities = 238/299 (80%), Gaps = 19/299 (6%)
Strand=Plus/Plus
Query 104 CTGCGGTCACTGGTATGTTCGTTACGGAGTCTGCATCGCCTGTAAATCAACGGTAAATAA 163
||| || |||||||| ||||||||||| ||||||||| || ||||||||||| | ||
Sbjct 102 CTGTGGACACTGGTACATTCGTTACGGATTCTGCATCGTATGCAAATCAACGGTGGACAA 161
Query 164 ACGCCAAGGCCGAGCATTCGATTATCTCGTCCAAGGTTTGCAGCTAAGCCA-CGAAGCAG 222
| | | | | || ||| ||| ||| | ||||| || ||||| || ||| ||
Sbjct 162 A-ACTATCGAAG-GC---CGAGTAT-TCG---ACGGTTTACATCTAAG-CAGCGAGGCTT 211
Query 223 CAGCGTTCACGAAGCGCT-TTACAACGGAATTCTATTGTCTCAATGA-GAAGAAGCTTCA 280
|||||| |||||||| | | | |||| |||||| ||||||||| | ||||||||||||
Sbjct 212 TAGCGTTAACGAAGCG-TCTCATAACGAAATTCTCTTGTCTCAA-CATGAAGAAGCTTCA 269
Query 281 CCTTGTCCTTGACTTGGACCACACGCTTCTCCACTCTATTAGGGTTTCAAT-TCTCTCAG 339
|||||||||||||||||||| |||||| ||||||| |||||||| || | |||||| |
Sbjct 270 CCTTGTCCTTGACTTGGACCTTACGCTTATCCACTCCGTTAGGGTTCCA-TGTCTCTCCG 328
Query 340 AAACAGAGAGGTATCTAATCGAAGAAGCGTG-TTCAACTACAAGGGAAGATCTGTGGAA 397
|| |||||| |||||||||||||||||| || |||||| |||||||||||||| |||||
Sbjct 329 AAGCAGAGAAGTATCTAATCGAAGAAGC-TGGTTCAACAACAAGGGAAGATCTATGGAA 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5