BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929612

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17580.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   451    1e-126
  AT1G48330.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   171    4e-42 


> AT3G17580.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G48330.1); 
Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6015184-6015850 
FORWARD LENGTH=667
Length=667

 Score =  451 bits (244),  Expect = 1e-126
 Identities = 260/268 (97%), Gaps = 0/268 (0%)
 Strand=Plus/Plus

Query  18   aaaaaaaTGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACATTC  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  87   AAAAAAATGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACATTC  146

Query  78   TTCAACCAACCGCAACAATCACCAAAGAAGGGTTGTCGTGGAAGAATGGATGCGAAAGCA  137
            ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| 
Sbjct  147  TTCAACCAACCTCAACAATCACCAAAGAAGGGTTGCCGTGGAAGAATGGATGCGCAAGCC  206

Query  138  AGGGAAGAGCACGAGAAGAGAATGGTTCAAGAGCTCCAAGGAGAAGTCATGGCTTGTGGT  197
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  207  AGGGAAGAGCACGAGAAGAGAATGGTTCAAGAGCTTCAAGGAGAAGTCATGGCTTGTGGT  266

Query  198  TACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCAAATAACCTC  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  TACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCAAATAACCTC  326

Query  258  TCTTGTTAATCTCAAAACCAAACACAAA  285
            |||| |||| | ||||||||||||||||
Sbjct  327  TCTTCTTAACCCCAAAACCAAACACAAA  354


> AT1G48330.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G17580.1); 
Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17863837-17864386 
FORWARD LENGTH=550
Length=550

 Score =  171 bits (92),  Expect = 4e-42
 Identities = 203/253 (80%), Gaps = 21/253 (8%)
 Strand=Plus/Plus

Query  13   AAAAG-a-aaaaaaTGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGC  70
            ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  48   AAAAGCATAAAAAATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGC  107

Query  71   AACATTCTTCAACCAACCGCAACAATCACCAAAGAAGGGTTGTCGTGGAAGAATGGATGC  130
            ||| ||||| ||||||||||| |||  ||    |||  |    ||   || |  |    |
Sbjct  108  AACGTTCTTTAACCAACCGCAGCAA--AC----GAACCGCCA-CGC--AA-AC-G----C  152

Query  131  GAAAG-CAAGGGAAGAGCACGAGAAGA-GAATGGTTCAAGAGCTCCAAGGAGAAGTCATG  188
             |||| | || ||||| || ||||| | ||| ||| || ||||| ||||| || ||||||
Sbjct  153  -AAAGGCGAGAGAAGAACATGAGAA-ACGAACGGTACAGGAGCTTCAAGGTGATGTCATG  210

Query  189  GCTTGTGGTTACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCTCA  248
            ||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| |||
Sbjct  211  GCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCA  270

Query  249  AATAACCTCTCTT  261
            || ||||||||||
Sbjct  271  AACAACCTCTCTT  283



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13170150238


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5