BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929616
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17611.1 | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 1... 1637 0.0
> AT3G17611.1 | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein
14 | chr3:6024796-6026443 FORWARD LENGTH=1425
Length=1425
Score = 1637 bits (886), Expect = 0.0
Identities = 995/1048 (95%), Gaps = 5/1048 (0%)
Strand=Plus/Plus
Query 1 AAAAGAATCATTACGAAGCAATGGAGAATTTTGGTGAAGGGAGAAGAAGTGGAGGCGGAG 60
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AAAAGAATAATTACGAAGAAATGGAGAATTTTGGTGAAGGGAGAAGAAGTGGAGGCGGA- 189
Query 61 GGATGTTGCCGTTGCTGGCGCTAAGCGCCGTCGCGGAGTACTATAGACTACCGTGGAAAC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 190 --ATGTTGCCGTTGCTGGCTCTAAGCGCCGTCGCGGAGTACTATAGACTACCGTGGAAAC 247
Query 121 CGCCGGTGACGGCGAGTCTTCTGGCCGCGAACACTCTCGTCTATCTTAGGCCGGCGTTTA 180
| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 248 CACCGGTGACGGCGAGTCTCCTGGCCGCGAACACTCTCGTTTATCTCAGGCCGGCGTTTA 307
Query 181 TCGACCCCGTTATTCCTCACATCAGTGAGGTCTGGTTCAATCCTCACCTCATCTTCAAGC 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TCGATCCCGTTATTCCTCACATCAGTGAGGTCTGGTTCAATCCTCACCTCATCTTCAAGC 367
Query 241 ATAAAGACTTGAAACGTTTATTTTTATCAGCGTTCTATCACGTTAACGAGCCTCACTTAG 300
|||| |||||||| ||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 368 ATAAGGACTTGAAGCGTTTATTTCTATCAGCGTTCTACCATGTTAACGAGCCTCACTTAG 427
Query 301 TCTACAACATGATGTCCCTTCTCTGGAAAGGTATCAAGCTCGAGACATCTATGGGAAGCA 360
|||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 428 TCTATAACATGATGTCACTTCTCTGGAAAGGTATCAAGCTTGAGACATCAATGGGAAGCA 487
Query 361 GTGAGTTTGCTTCAATGGTCTTTCCTCTTATTGGTATGTCTCAAGGAGTCACATTGCTGT 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 488 GTGAGTTTGCTTCAATGGTCTTTACTCTTATTGGTATGTCTCAAGGAGTCACATTGTTGT 547
Query 421 TAGCCAAATCGCTTCTTGTGTTGTTCGACTATGACAGAGCTTATTACAACGAGTACGCCG 480
||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| || |
Sbjct 548 TAGCCAAATCGCTTCTTCTCTTGTTTGACTATGACAGAGCTTACTACAACGAGTATGCGG 607
Query 481 TTGGGTTCTCGGGGGTTCTCTTTGCTTTGAAAGTTGTTCTTAATTCTCAGGCTGAGGATT 540
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 608 TTGGGTTCTCGGGTGTTCTCTTTGCTATGAAAGTTGTTCTTAATTCTCAAGCTGAGGATT 667
Query 541 ACTCAAGCGTGTATGGTATCCTGGTTCCAACAAAGTATGCTGCTTGGGCAGAACTGA-TC 599
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 668 ACTCAAGTGTGTATGGTATCTTGGTTCCAACAAAGTATGCTGCTTGGGCAGAATTGATTC 727
Query 600 TTAGTGCAGATGTTTGTACCGAATGCTTCGTTTCTTGGGCATTTTGGTGGAATCCTTGCT 659
||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 728 -TAGTGCAGATGTTTGTACCTAACGCTTCGTTTCTTGGGCATTTGGGTGGAATCCTTGCT 786
Query 660 GGTATTTTCTATATGAAGCTGAAAGGTTCTTACTCAGGCTCAGATCCAGTCACCATGGCG 719
|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 787 GGTATTATCTATTTGAAGCTGAAAGGTTCTTACTCAGGCTCAGATCCAGTCACTATGGCG 846
Query 720 GTTAGAGGTGTAACTCGATTGGTGACGTGGCCCTTGAGGTTTCTGAACGGTATGGTTAGG 779
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 847 GTTAGAGGTGTATCTCGATTGGTGACGTGGCCCTTGAGGTTTCTGAATGGTATGGTTAGG 906
Query 780 TCTCGGAGAAGGAGGATTACAGGGAGAGGAAGAGTGGGAAGAGGCCAGACTGGGATAGCA 839
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 907 TCTCGGAGAAGGAGGATTACGGGGAGAGGAAGAGTGGGAAGAGGTCAGACTGGGATAGCA 966
Query 840 GGACCTGGTATCTGGAGATGCCAGTCGTGTACATATGACAATTCTGGTTGGTTAAGTGCT 899
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 967 GGACCTGGTATTTGGAGATGTCAGTCGTGTACATATGACAATTCTGGTTGGTTAAGTGCT 1026
Query 900 TGCGAGATGTGTGGCTCGGGACGGGCTAGAGGAGACGGATGGTCACTGAATCAGGGACCA 959
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1027 TGCGAGATGTGTGGCTCGGGACGGGCTAGAGGAAATGGATGGTCACTGAATCAGGGACCA 1086
Query 960 GCACTTTCTTCTTCTAATGATCTCCCTTTAGATGAGCTGCGCCGTCGAAGAGTAGAAAGG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1087 GCACTTTCTTCTTCTAATGATCTCCCTTTAGATGAGCTGCGCCGTCGAAGAGTAGAGAGG 1146
Query 1020 TTTAGTTGATCTCTGGAGCTCATTCTTA 1047
||||||||||||| ||||| ||||||||
Sbjct 1147 TTTAGTTGATCTCGGGAGCGCATTCTTA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5