BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929631
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17710.1 | Symbols: | F-box and associated interaction doma... 981 0.0
AT3G18340.1 | Symbols: | F-box and associated interaction doma... 241 1e-62
AT3G51171.1 | Symbols: | F-box and associated interaction doma... 178 8e-44
AT2G07120.1 | Symbols: | F-box associated ubiquitination effec... 122 4e-27
> AT3G17710.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6055548-6056778 FORWARD LENGTH=1231
Length=1231
Score = 981 bits (531), Expect = 0.0
Identities = 690/763 (90%), Gaps = 25/763 (3%)
Strand=Plus/Plus
Query 1 TTTGTAAAACAGAACACCTAATGGCGTCGGGGAAGCTT-CCGTGGGATTTGGAGGAAGAG 59
||||||||||||| ||||| |||||||||| |||| || |||||||||||||||||||||
Sbjct 30 TTTGTAAAACAGAGCACCTGATGGCGTCGGTGAAG-TTGCCGTGGGATTTGGAGGAAGAG 88
Query 60 ATACTGTGTCGGCTTCCACCTCGATCTCTTGTTCGGTTCA-GATCCGTATGTAAACACTG 118
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 89 ATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCGGTTCAGGA-CCGTATGTAAACACTG 147
Query 119 GAACGATCTTTTCTA-CGATAAGAGCTTTGTCAAAAAGCACTTGAGT-CGTACCCGTACC 176
||||| ||||||| | ||| ||||| |||||||||||||||||| || ||| ||||| ||
Sbjct 148 GAACGGTCTTTTC-AGCGACAAGAGGTTTGTCAAAAAGCACTTG-GTCCGTGCCCGTCCC 205
Query 177 CAATTCATCTTCCTGACCGAATCGAAGAAGATGTACTCGATAGACATCGATATGGGCGGA 236
|||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 206 CAATTCATCTTCCTTACCGAATCGAAGAAGATGTACTCGATAGAGATCGATCTGGGTGGA 265
Query 237 ACGATAGAGGTGCGTGAGCTATCCTATGATTTTCATTGTCAGCCTATGAAGACGAAATTT 296
|||||||||||||||||| || |||| ||||||||||||||||||||||||| ||| |||
Sbjct 266 ACGATAGAGGTGCGTGAGGTACCCTACGATTTTCATTGTCAGCCTATGAAGAAGAATTTT 325
Query 297 ACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGAAATTTGGAAACAAGGTGTTGCG 356
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 326 ACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGCG 385
Query 357 GTTTGGAATTCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTCCAT 416
||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 386 GTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCGT 445
Query 417 ATTTT-TGGTGTAGGATACGATAGTTGTAGACCCGAAAAGGGTTACAAGATCTTGGGGTA 475
|||| |||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 446 -TTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504
Query 476 TATTAATTGTATC-CGTAGAGTCAGCGACTCTCTCCAGGTAGGTTA-TGACAAAGTTGCG 533
| ||||||||| | |||||| |||||||||||||||||| |||||| | || ||| ||||
Sbjct 505 TTTTAATTGTA-CGCGTAGACTCAGCGACTCTCTCCAGGAAGGTTACT-ACCAAGCTGCG 562
Query 534 ATCTACGAGTGTGCTTCTCAGGCGTTGAAGTTTATTGATA---C---CCCTTTCAACCAC 587
|||||||||||||| || |||||||| || |||||||||| | |||||||||||
Sbjct 563 ATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAACCTG 622
Query 588 TGGCCCACCAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAATCGC 647
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 623 TGGCCCAACAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAACCAC 682
Query 648 ---GAGACTCTTGAGTATTTCATCCAAACCTTTGATTTCTCGATGGAGATATTCAAACCC 704
||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 683 CCTGAGACTCTTGAGTATTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTCAAACCC 742
Query 705 TTTTGTCTCCTGCCGTGTCAGATGGACTATTG-TAGCAATGAA 746
|||||||| |||||||||| || ||||| ||| ||||||||||
Sbjct 743 TTTTGTCTACTGCCGTGTCGGAAGGACT-TTGGTAGCAATGAA 784
> AT3G18340.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6294018-6295134 FORWARD LENGTH=1086
Length=1086
Score = 241 bits (130), Expect = 1e-62
Identities = 367/474 (77%), Gaps = 45/474 (9%)
Strand=Plus/Plus
Query 21 ATGGCGTCGGGGAAGCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCACCT 80
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCGTCGGGGAAGCTTCCGTGGGAGTTGGAGGAAGAGATATTGTGTCGGCTTCCACCT 60
Query 81 CGATCTCTTGTTCGGTTCAGATCCGTATGTAAACACTGGAACGATCTTTTCTA-CGATAA 139
|||||||||||||| | ||||||||||||||||||||||||||||||| || ||| ||
Sbjct 61 GGATCTCTTGTTCGGCTAAGATCCGTATGTAAACACTGGAACGATCTTTA-TAACGACAA 119
Query 140 GA-GCTTTGTCAA-AAA-GCACTTGAGTCGTACCCGTACCCAATTCATCTTCCTGACCGA 196
| | || |||| ||| || ||| || | | ||| ||||||||||| ||||| |||
Sbjct 120 -ATGGTTCATCAAGAAAAGC--TTGGGTTTTGCACGTCCCCAATTCATCATCCTGGCCGG 176
Query 197 AT-CGAAGAAGATGTACTCGATAG-ACATCGATATGGGCGGAACGATAGAGGTGCGTGAG 254
|| | |||| | || ||||||| | | | || ||| | | || || ||| |
Sbjct 177 ATTC-AAGAT--T-TATTCGATAGGA-ACC-AT-----CGGT-C--TGGACGT-CGTT-G 220
Query 255 CTATCCTATGATTTTCATTGTCAGCCT-ATGAAGACGAAATTTACAACTATCATGGCTTG 313
|||| | ||| | | || || | |||| | |||||| | |||| ||||||
Sbjct 221 --ATCCGAAGAT----A--G--AGGCTGA-GAAGTGGGCATTTACCAGGATCACGGCTTG 269
Query 314 CGATGGGTTATTGTTTCGTGAAATTTGGAAACAAGGTGTTGCGGTTTGGAATTCGTGGTT 373
| |||| |||||||||||||| ||||||| ||||| ||| | |||||||| | |||||
Sbjct 270 CAATGGATTATTGTTTCGTGACTTTTGGAACCAAGGGGTTACCATTTGGAATCCATGGTT 329
Query 374 GAGACAGGTTGGATGGATCGAGTAC--G-AGGATAAAGGTTTCCATATTTTT-GGTGTAG 429
||||| ||||| ||||| ||||| | |||| |||| ||||| | |||| ||| |||
Sbjct 330 AAGACAAGTTGGGTGGATTGAGTATAAGGAGGACAAAGATTTCCGT-TTTTGCGGTATAG 388
Query 430 GATACGATAGTTG-TAGACCCGAAAAGGGTTACAAGATCTTGGGGTATATTAAT 482
|||||||| | || || |||||||||||||||||||||||| |||||| |||||
Sbjct 389 GATACGAT-GCTGGTAAACCCGAAAAGGGTTACAAGATCTTTGGGTATTTTAAT 441
> AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19010805-19012008 FORWARD LENGTH=1204
Length=1204
Score = 178 bits (96), Expect = 8e-44
Identities = 542/744 (73%), Gaps = 83/744 (11%)
Strand=Plus/Plus
Query 35 GCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCA-CCTCGATCTCTTGTTC 93
|||||| ||||| | |||||||| ||||||| ||| ||| || || | |||||||||||
Sbjct 60 GCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTTC 118
Query 94 GGTTCAGATCCGTATGTAAAC-ACTGGAACGATCTTTTCTACGATAAGAGCTTT-GTCAA 151
| ||||||||||| || |||| | ||||| |||||||| | || ||||| ||| ||||
Sbjct 119 GATTCAGATCCGTTTGCAAACGA-TGGAATTATCTTTTCGATGAAAAGAG-TTTCATCAA 176
Query 152 AAAGCACTTGAG-TCGTACCCGTACC-CAATTCATCTTCCTGACCGAATCGAAGAAGATG 209
||| ||||| | |||| | || || || ||||||||| ||||||| || || ||
Sbjct 177 AAACCACTT-CGCTCGTGCTTGT-CCTCAGTTCATCTTCATGACCGATTC---CAATATT 231
Query 210 TACTCGAT--AGA-CATCGATAT-G--GGCG--G----AACGA-TAGAGGTGCGTGAGCT 256
|| ||||| ||| ||||| | | | |||| | ||||| || || | |||| |||
Sbjct 232 TATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTA-AGTTACGTGTGCT 290
Query 257 --A-TCCTATGATTTTCATTGTCAGCCTATGAAGACGAAA--T--TTAC--AACTATCA- 306
| |||| || | || | | | || || | |||| | |||| ||| ||||
Sbjct 291 AGACTCCTCTG-GTATCCCT-T-A-CC-GTG-ACTGGAAATTTGCTTACATAACCATCAC 344
Query 307 TGGCTTGCGATGGGTTATTGTTTCGTGAAAT-TT-GG--A-AAC-AAGGTG-TTGCGGTT 359
| |||||||||||||| |||||| || || | || || | | |||| | || ||
Sbjct 345 T-GCTTGCGATGGGTTCTTGTTTTGT-AACTCTTGGGCTAGTCCTAAGGGGACAGCTTTT 402
Query 360 TGGAATTCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTCCATATT 419
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||| || |
Sbjct 403 TGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTC 462
Query 420 TTTGG-TGTAGGATACGATAGTTGTAGACCCGAAAAGGGTTACAAGATCTTGGGGTATAT 478
| ||| | |||||||||||| | |||| || ||||| |||||| |||||||||||| |
Sbjct 463 TGTGGCT-TAGGATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTAT-T 520
Query 479 TAAT-TGTATCCGT-A-GAGTCAGCGACTCTCTCCAGGTAGGTTATGAC-A-A-AGTTGC 532
|||| ||| || | | || | | | |||| | | | || | | || | | ||||||
Sbjct 521 TAATGTGTCGCCCTGAAGA-TGGGAG-CTCT-TAC-G-TA--T-ACCACCAGAGAGTTGC 572
Query 533 GATCTACGAGTGTGCTTCTCAGGCGTTGAAGTTTATTGATACCCCTTTCAACCACTGGC- 591
||||||||| ||||| ||||| ||||| ||||||||||| | | ||| |||||
Sbjct 573 GATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGACTGGTT 632
Query 592 CC-A-CCAAGGAT-C-C--TT---TGTC-CGT-GAACGGGAATCTTTATTGGCTTGCTCA 640
|| | || | | | | | || ||| | | |||||| ||||| ||||||||| |||
Sbjct 633 CCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTCC 692
Query 641 TAATCGCGAGACTCTTGAGTATT-TCATCCAAACCTTTGATTTCTCGATGGAGATATTCA 699
|| || | | ||| ||| | || |||||||| ||||||||||| | |||||||| ||
Sbjct 693 TATTCCCAACACTGATGACT-TTCTCATCCAATGTTTTGATTTCTCTAGGGAGATATGCA 751
Query 700 AACCCTTTTGTCTCCTGCCGTGTC 723
||||||||||||| || || ||||
Sbjct 752 AACCCTTTTGTCTTCTTCCTTGTC 775
> AT2G07120.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:2953605-2954722 REVERSE LENGTH=1062
Length=1062
Score = 122 bits (66), Expect = 4e-27
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 21 ATGGCGTCGGGGAAGCTTCCGTGGGATTTGGAGGAAGAGATACTGTGTCGGCTTCCACCT 80
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGGGGAAGCTTCCGTGGGAGTTGGAGGAAGAGATACTGTGTCGGCTTCCACCT 60
Query 81 CGATCTCTTGTTCGG 95
|||| |||||||||
Sbjct 61 GGATCCCTTGTTCGG 75
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5