BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929638

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24927.1 | Symbols:  | pseudogene of unknown protein | chr3:...   183    8e-46


> AT3G24927.1 | Symbols:  | pseudogene of unknown protein | chr3:9103087-9103989 
FORWARD LENGTH=903
Length=903

 Score =  183 bits (99),  Expect = 8e-46
 Identities = 137/155 (88%), Gaps = 4/155 (3%)
 Strand=Plus/Plus

Query  75   tttttttCCGGCATCGGTGGCTCTGTTTA-GCACAGTTGGTCGGCAAAATTCCAACACCG  133
            |||| ||| |||||||||||||||| ||| |||| ||||| ||||||| ||||| || ||
Sbjct  118  TTTTCTTCTGGCATCGGTGGCTCTG-TTATGCACCGTTGGCCGGCAAACTTCCAGCATCG  176

Query  134  GTTGGCTTCTTCCGCAACGGTGGCTGGCTACGTCTCCATCGATTCGTCCTCTG-GCGATT  192
             |||||||||||||||||||||||||||| |||||||||||||||||| || | | ||||
Sbjct  177  ATTGGCTTCTTCCGCAACGGTGGCTGGCTTCGTCTCCATCGATTCGTCTTC-GAGAGATT  235

Query  193  CGGATGGCTTTTGTACCGGCTTTTGTCCGGATTTG  227
            |||||||||| ||| ||||||||||||||| ||||
Sbjct  236  CGGATGGCTTATGTCCCGGCTTTTGTCCGGTTTTG  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17895318644


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5