BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929654
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13680.1 | Symbols: | F-box and associated interaction doma... 87.9 1e-16
AT3G17490.1 | Symbols: | F-box and associated interaction doma... 76.8 3e-13
> AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433
Score = 87.9 bits (47), Expect = 1e-16
Identities = 73/84 (87%), Gaps = 7/84 (8%)
Strand=Plus/Plus
Query 31 ATCTTCCATGG-GATGTGGTAGAGGAGATACTCTCTAGGGTTCCGGTGACATCTTTGAGA 89
|||||||| || ||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 17 ATCTTCCA-GGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGCTGACATCTCTGAG- 74
Query 90 CGGTTA-A-GATCTACTTGC-AAA 110
|| || | ||||||||||| |||
Sbjct 75 -GGCTATACGATCTACTTGCCAAA 97
> AT3G17490.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5984827-5985993 FORWARD LENGTH=1167
Length=1167
Score = 76.8 bits (41), Expect = 3e-13
Identities = 69/82 (84%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 31 ATCTTCCATG-GGATGTGGTAGAGGAGATACTCTCTAGGGTTCCGG-TGACATCTTTGAG 88
||||| || | |||| |||||||||||||||||||||||||||||| | | |||| | |
Sbjct 14 ATCTTTCA-GAGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCT-ATATCTCTAAA 71
Query 89 ACGGTTAAGATCTACTTGCAAA 110
||| ||| ||| ||||||||||
Sbjct 72 ACGATTACGATATACTTGCAAA 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5