BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929657
Length=2554
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 4229 0.0
> AT3G17900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0;
Other Eukaryotes - 2 (source: NCBI BLink). | chr3:6128506-6133383
FORWARD LENGTH=3061
Length=3061
Score = 4229 bits (2290), Expect = 0.0
Identities = 2473/2562 (97%), Gaps = 10/2562 (0%)
Strand=Plus/Plus
Query 1 CAGTTTTT--GGGTTTTGAGGAATGAATTTCTTGCTTCGATCTGCTTCTTCCGCTACTCA 58
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CAGTTTTTGGGGGTTTTGAGGAATGAATTTCTTGCTTCGATCTGCTTCTTCCGCTACTCA 268
Query 59 TCGGCCTCCGGTGAGCGAACCACCAGCTACTCCCCCTCAACCTCCGCCTGAAACAGCCAA 118
|||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 269 TCGGCCTCCGGTGATCGAACCACCAGCTACGCCGCCTCAACCTCCCCCTGAAACAGCGAA 328
Query 119 GCCCGGAGTTACTTTGGAAGGGCTGATAGCTGAAGAGTC-TTTCCCTCAATATCCGTCAG 177
||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| ||||
Sbjct 329 GCCCGGAGTTACTTTGGAAGGGCTGATTGCTGAAGAG-CATTTCCCACAATATCCATCAG 387
Query 178 TAGAAGAAGATCTCGATCGTCTGGCTAACGGATCCAGAGACGATGATGGTAGTGGAGAGT 237
|||| ||||||||||||||| ||| | | ||||| ||||| |||||||| ||||||||
Sbjct 388 TAGATGAAGATCTCGATCGTGTGGGTGATGGATCTGGAGACCTTGATGGTAATGGAGAGT 447
Query 238 CAAATGCTAAGTCTGGTGGCTCTGGTATGGACAGATTCTCAGATGTGTCTGAGGAAGAAG 297
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 448 CAAATGCTAAGTCTGGTGGCTCTGGTATGGAGAGATTCTCTGATGTGTCTGAGGAACAAG 507
Query 298 GATGGATCGCCATTCCATATAAGGAGATCCCGGATAACTGGTCTGAGTCTGTTGATATTC 357
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 508 GATGGATCGCCATTCCATACAAGGAGATCCCTGATAACTGGTCTGAGTCAGTTGATATTC 567
Query 358 ATTCTTTACGGTCGCTGGATCGTTCCTTTGTTTTTCCTGGGGAGCAGATTCAAATCCTTG 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 ATTCTTTACGGTCGTTGGATCGTTCCTTTGTTTTTCCTGGGGAGCAGATTCAAATCCTTG 627
Query 418 CATGCTTATCTGAGAGTAAAGGAGACACAGAGTTTATTACCCCTTTTAAGGTTGCTGAGG 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 628 CATGCTTATCTGAGAGTAAAGGAGACACAGAGATTATTACCCCTTTTAAGGTTGCTGAGG 687
Query 478 TAATGAGCAGAACTGGACAGAGAAAGGTCTCTGACAAACAAAATGGGGATATGTCTGATG 537
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 688 TAATGAGCAGAACTGGACAAAGAAAGGTCTCTGACAAACAAAATGGAGATATGTCTGATG 747
Query 538 GGGCGAGTACACCATCAGGGGATGGAGAAATGAGTCCTGATGCTCAATTTGCTACTCAGA 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GGGCGAGTACGCCATCAGGGGATGGAGAAATGAGTCCTGATGCTCAATTTGCTACTCAGA 807
Query 598 ATGGTGACAGTCCTGGTAAAGAGAGTTTGGATTCACAAAAGGACTTATCTGATGGTGAAT 657
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 808 ATGGTGACAGTCCTTGTAAAGAGAGTTTGGATTCACAAAAAGACTTATCTGATGGTGAAT 867
Query 658 CAATCTTGAGGATGGAAGATCATAAGAGACGAACAGAAGACTTGCTTTCCAGGTTTCAGA 717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 868 CAATCTTGAGGATGGAAGATCATAAGAGACGAACAGAAGATTTGCTTTCCAGGTTTCAGA 927
Query 718 AGTCTCATTTCTTTGTTAGGATTGCAGAGTCTGGTGAGCCTCTTTGGTCAAAGAAAAGTT 777
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 928 AGTCTCATTTCTTTGTTAGGATTGCAGAGTCTGGTGAGCCACTTTGGTCAAAGAAAAGTT 987
Query 778 CTCTGGTCGCAGATACAGAGATGGATGAAAAGAGGAAAAGCGCGAAAAGTAGACCTTGTG 837
||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 988 CTCTGGTCGCAGATACAGAGATGGATGAAGAGAGGAAAAGAACAAAAAGTAGACCTTGTG 1047
Query 838 TTAGTGCTTTTGTAGATAGAGGAGACTTCGATCCTAATGTTGCTGGAGGTGTAGCTAGAA 897
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1048 TCAGTGCTTTTGTAGATAGAGGAGACTTCGATCCTAATGTTTCTGGAGGTGTAGCTAGAA 1107
Query 898 GTAAGGCAAAATGCTGTGCCCTACCCAATGGAGATATAGTGGTCTCTTTACAAGTTTATA 957
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1108 GTAAGGCAAAATGCTGTGCCTTACCAAATGGAGATATAGTGGTCTCTTTACAAGTTTATA 1167
Query 958 TTGTCGACTGTCCCAAAGAACCCATCATAGAGATACTGCAGTTTGAGAAGCATCAGGACA 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TTGTCGACTGTCCCAAAGAACCCATCATAGAGATACTGCAGTTTGAGAAGCATCAGGACC 1227
Query 1018 AGGACCAAAATTCTGAGAACGATAAGGATCCATATGGGAATCTTTTAAAGTGGTTAATAC 1077
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1228 AGGACCAAAATCCTGAGAACGATAAGGATCCATATGGGAATCTTTTAAAGTGGTTGATAC 1287
Query 1078 CGCTGGATAACACTATTTCTCAGCAACCCCGTTCTTTACCACCTCCTATAACCCCTAGTC 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1288 CGCTGGATAACACTATTTCTCAGCAACCCCGTTCTTTACCACCTCCTATAACCCCTAGCC 1347
Query 1138 CAGGTATCAGCAGCACTGCACACAAGCCAGCGATCTCTTCTACCTCAGGCTCTCAACTCT 1197
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1348 CAAGTATCAGTAGCACTGCACACAAGCCAGCGATATCTTCTACCTCAGGCTCTCAACTCT 1407
Query 1198 TCTCATTCGGCCATTTTAGAAGCTACTCCATGTCCGCTCTACCTCCAAACACTGCACCAG 1257
||||||| || |||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1408 TCTCATTTGGTCATTTTAGAAGCTATTCAATGTCCGCTCTGCCTCCAAACACTGCACCAG 1467
Query 1258 TTACTGGACCCATAAAAACACAGAGCTCTAAACCATCATTTGATATTGAAGATTGGGACA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 TTACTGGACCCATAAAAACACAGAGCTCTAAACCATCATTTGATATTGAAGATTGGGACA 1527
Query 1318 GCTACTCAGGTCAAACGGTGCGAAATGGTCAGAAGTCTGGGACTGAAGAGCTCTTATCTT 1377
| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1528 GTTACTCAGGCCAAACGGTACGAAACGGTCAGAAGTCTGGGACTGAAGAGCTCTTGTCTT 1587
Query 1378 TTCGGGGTGTTGCATTGGAGCGGGATAGGTTTTCTGTTCGTTGTGGACTCGAAGGCATCT 1437
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TTCGGGGTGTCGCATTGGAGCGGGATAGGTTTTCTGTTCGTTGTGGACTCGAAGGCATCT 1647
Query 1438 GCATCCCTGGTAGAAGGTGGAGGAGGAAACTAGAGATCATTCAACCTATTGAGATAAACT 1497
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1648 GCATCCCTGGTAGAAGGTGGAGGAGGAAACTCGAGATCATTCAACCTATTGAGATAAACT 1707
Query 1498 CTTTTGCAGCTGACTGCAATACAGATGATCTTCTCTGCGTTCAGATAAAGAATGTGGCTC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 CTTTTGCAGCTGACTGCAATACAGATGATCTTCTCTGCGTTCAGATAAAGAATGTGGCTC 1767
Query 1558 CTACCCATGCTCCAGATATTGTAATATACATAGACGCCATAACAATTGTTTTTGAAGAGG 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1768 CTACCCATGCTCCAGATATTGTAATATACATAGACGCCATAACAATTGTTTTTGAAGAAG 1827
Query 1618 CAGGAAAAAATGCTTCCCCTTCTTCAGTACCAATAGCATGCATTGAAGCTGGAAACGAGC 1677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 CAGGGAAAAATGCTTCCCCTTCTTCAGTACCAATAGCATGCATTGAAGCTGGAAACGAGC 1887
Query 1678 ACAGTTTGCCAAATTTAACTCTCAGGAAAGGTGAGGAGCACTCATTCATCGTGAAGCCTG 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1888 ACAGTTTGCCAAATTTAACTCTCAGGAAAGGTGAGGAGCACTCATTCATCGTAAAGCCTG 1947
Query 1738 CGTTTTCTGTTGGGAGTAATCTGAAGCCCTCTGCTGCACGAAACAAACTCAAATCATCGA 1797
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1948 CGTTTTCTGTTGGGAGTAATCTGAAGCCCTCTGCTGCACGAAATAAACTCAAATCATCGA 2007
Query 1798 GTTTGTCTCTTCCAGCTGTAAATTTTGAAAGAAAAGGGAGCGGTTTAAGTGGTGATCAGT 1857
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 GTTTGTCTCTTCCAACTGTAAATTTTGAAAGAAAAGGGAGCGGTTTAAGTGGTGATCAGT 2067
Query 1858 ATGCGGTTATGGTGTCATGTCGGTGCAACTACACAGAATCAAGACTGTTTTTCAAACAAC 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 ATGCGGTTATGGTGTCATGTCGGTGCAACTACACAGAATCAAGACTGTTTTTCAAACAAC 2127
Query 1918 GGACAAAATGGAGACCACGAGTTTCGAGAGACCTGATGATCTCTGTTGCGTCTGAAATGT 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 GGACAAAATGGAGACCACGAGTTTCGAGAGACCTGATGATCTCTGTTGCGTCTGAAATGT 2187
Query 1978 CAGGAGAGCCTTGTGGTCCCCATGGTAGAGCCTCTCAACTACCCGTTCAGATTTTAACTC 2037
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2188 CAGGAGAGCCTTGTGGTCCCCATGGGAGAGCCTCTCAACTACCCGTTCAGATTTTAACTC 2247
Query 2038 TTCAGGCATCGAATTTGACTTCAGAAGATCTATCTTTGACCGTTCTCGCTCCTGCATCCT 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 TTCAGGCATCGAATTTGACTTCAGAAGATCTATCTTTGACCGTTCTCGCTCCTGCATCCT 2307
Query 2098 TCACATCACCTCCGACTGTGGTGTCCCTAAACTCTACGCCTACGACCCCTATAAGCCCAT 2157
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 TCACATCACCTCCAACTGTAGTGTCCCTAAACTCTACGCCTACGACCCCTATAAGCCCAT 2367
Query 2158 TCCTAGGATTCTCTGAGTTCACCGAGAGGGTACAAAATGAGAAACGCAACACTAC-GATG 2216
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| | ||
Sbjct 2368 TCCTAGGATTCTCTGATTTCACCGAGAGAGTACAAAACGAGAAACGCAACACTACAG-TG 2426
Query 2217 CGTAAACATCAATCGTTACCCCCAATTCCACTGGAGACAAGGACAGAGAACA-CA-AA-T 2273
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 2427 CGTAAACAGCAATCGTTACCCCCAATTCCACTGGAGACAAGGACAGAGAACAACACAAAT 2486
Query 2274 GGTGAATCTTCCAATCCTTCAGATGTTGTTCCAAAGAGCGGCTTAGGTTGCACACATCTC 2333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487 GGTGAATCTTCCAATCCTTCAGATGTTGTTCCAAAGAGCGGCTTAGGTTGCACACATCTC 2546
Query 2334 TGGCTACAAAGTCGAGTTCCCTTGGGATGCGTTCCTTCGAAATCTACGGCGACGATCAAG 2393
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2547 TGGCTACAAAGTCGAGTTCCCTTAGGATGCGTTCCTTCGAAATCTACGGCGACAATCAAG 2606
Query 2394 CTAGAGCTACTACCTTTGACTGATGGCATAATCACTCTTGATACTCTCCAGATCCATGCC 2453
||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2607 CTAGAGCTACTCCCTTTGACTGATGGCATAATCACTCTGGATACTCTTCAGATCCATGCA 2666
Query 2454 AAGGAAAAAGGTCGTAGATACATTCCAGAGCAGTCACTGAAGATAAACGCAACTTCAAGC 2513
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2667 AAGGAGAAAGGTCGTAGATACATTCCAGAGCAGTCACTGAAGATAAACGCAACTTCAAGC 2726
Query 2514 ATTTCCTCTGGGATTTTCTAGTCTTT-ACCCAATGCCACTTT 2554
|||||||||||||||||||||||||| |||||||||||||||
Sbjct 2727 ATTTCCTCTGGGATTTTCTAGTCTTTTACCCAATGCCACTTT 2768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126771864961
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5