BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929659
Length=3070
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17920.1 | Symbols: | Outer arm dynein light chain 1 protei... 4900 0.0
> AT3G17920.1 | Symbols: | Outer arm dynein light chain 1 protein
| chr3:6137255-6142023 FORWARD LENGTH=3033
Length=3033
Score = 4900 bits (2653), Expect = 0.0
Identities = 2910/3036 (96%), Gaps = 9/3036 (0%)
Strand=Plus/Plus
Query 21 ATGGCAATCGTTACCGGAGATCGATATCTAGAGACTCTCCAGAAGTTTCTTGAAGAGAAA 80
||||| |||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||
Sbjct 1 ATGGCCATCGTTACCGGAGATCGATATCTAGAGAATCTCCAGAGGTTCCTTGACGAGAAA 60
Query 81 GCTGATTTGCTTATTGATGGTACCGATGTTCTCAAGCTTAATCCCGCAGGCCTTCACTAT 140
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 61 GCTGATTTGCTTATTGATGGTACCGATGTCCTCAAGCTTAATCCCGCGGGTCTTCACTAT 120
Query 141 GTTCATCTCCGTCTCGAATCTCTTCGTGAACTTGAGCTTATGCTCTCCGGAGCTCCCGTT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCATCTCCGTCTCGAATCTCTTCGTGAACTTGAGCTTATGCTCTCCGGAGCTCCCGTT 180
Query 201 GACTATCTCCGCGCCTACGTCTCCGACATTGGCGATTTTCGTGCCCTTGAGCAGCTCCGA 260
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GACTATCTCCGTGCCTACGTCTCCGACATTGGCGATTTCCGTGCCCTTGAGCAGCTCCGG 240
Query 261 CGTATTCTCCGCCTCCTTCCTTCTCTCAAGGTCGTTTCGTCGCTTCCTTCACCGGCTCGT 320
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 241 CGTATTCTCCGTCTCCTTCCTTCTCTTAAGGTCGTTTCATCGCTTCCTTCACCGGCTCGT 300
Query 321 GATCCTACGCCGCTATCTCTTCTTCCTTTTTCTAAGCTTAAGGTCTTGGAACTCCGTGGG 380
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATCCTACGCCGCTCTCTCTTCTTCCTTTTTCTAAGCTTAAGGTCTTGGAACTCCGTGGC 360
Query 381 TGTGATTTGTCTACTTCTTCTGCCAAAGGCTTGCTCGAACTCAGGCACACCTTGGAGAAG 440
||||||||||||||||||||||| || || ||||| |||||||||||||| |||||||||
Sbjct 361 TGTGATTTGTCTACTTCTTCTGCTAAGGGATTGCTAGAACTCAGGCACACTTTGGAGAAG 420
Query 441 TTGATCTGCCATAATTCCACTGATGCGCTT-CGGCATGTGTTTGCTAGTAGAATCGCCGA 499
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 421 CTGATCTGCCATAATTCCACTGATGCG-TTGCGGCATGTGTTTGCTAGTAGAATCGCTGA 479
Query 500 GATAAAGGATTCACCACAGTGGAATAAGTTGGCTTTCATTTCTTGTGCTTGCAACCGTCT 559
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GATAAAGGATTCACCACAGTGGAATAAGTTGGCTTTCATTTCTTGTGCTTGTAACCGTCT 539
Query 560 TGTTCTCATGGATGAGTCGTTGCAACTTCTTCCAGCTGTTGAGTCCCTTGATCTTAGCCG 619
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 540 TGTGCTCATGGATGAGTCGTTGCAACTTCTTCCAGCTGTTGAGTCGCTTGATCTGAGCCG 599
Query 620 AAACAAGTTTGCAAAGGTAGATAATCTTCGGAGATGTACCAAGTTGAAACACCTTGATCT 679
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 AAACAAGTTTGCAAAGGTGGATAATCTTCGGAGATGTAACAAGTTGAAACACCTTGATCT 659
Query 680 GGGTTTCAATCAACTTAGAAAAATCTCTCACCTGAGCGAGGTATCCTGTCACCTTGTTAA 739
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGTTTCAATCAACTAAGAAAAATCTCTCACCTGAGCGAGGTATCCTGTCACCTTGTTAA 719
Query 740 ACTTGTTTTGAGGAACAACGCGCTAACTACATTGCGTGGGATTGAGAATTTGAAGTCACT 799
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTTGTTTTGAGGAATAACGCGCTAACTACATTGCGTGGGATTGAGAATTTGAAGTCACT 779
Query 800 TGAAGGCCTTGATGTTTCCTTCAATCTTATTTCCGACTTTTCAGAACTGGAATTTCTCGG 859
||||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 780 TGAAGGCCTGGATGTTTCCTTCAATCTTATTTCCGACTTCTCGGAACTGGAGTTCCTCGG 839
Query 860 GAGTCTTTCATTCTTGACAGACCTGTGGTTGGAAGGAAATCCAATTTGCTGTGCTCGATG 919
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 840 GAGTCTTTCATTCTTGACAGACCTCTGGTTGGAAGGAAATCCAATTTGTTGTGCTCGATG 899
Query 920 GTATAGAGCTCATGTCCTCAGCTACGTTT-CTCTTCCAAATGATTTGAAGCTAGATGGCA 978
||| || || ||||||||||||||||||| | ||||||||||||||||| || |||||||
Sbjct 900 GTACAGGGCACATGTCCTCAGCTACGTTTAC-CTTCCAAATGATTTGAAACTTGATGGCA 958
Query 979 AACATATTGGGAATAGAGAATTTTGGAAGAGGCAGGTAGTTGTTACCCGTAGGAAAAGTC 1038
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 AACATATTGGGAATAGAGAATTTTGGAAGAGGCAGGTTGTTGTTACCCGTAGGAAAAGTC 1018
Query 1039 AGCCTGCCAGTTATGGGTTCTACTCTCCGGCTAGAGACGAAGCTGATGACGAAGGAAGCT 1098
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCCTGCCAGTTACGGGTTCTACTCTCCGGCTAGAGACGAAGCTGATGACGAAGGAAGCT 1078
Query 1099 GTAATAGAAAAAAGACGAAAATCTACCGGCTCCCGTCTATTGATAGTGAGGAAGAGAGCA 1158
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1079 TTACTAGAAAAAAGACGAAAATCTACCGGCTCGCGTCTATTGATAGTGAGGAAGAGAGCA 1138
Query 1159 CCTATGTGAATTCTGATCAAGAGTCTGCTTCATGTGAACCCGAGACTCAAAGCAAAGAAG 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 CCTATGTGAATTCTGATCAAGAGTCTGCTTCATGTGAACCCGAGACTCAAAGCAAAGAGG 1198
Query 1219 AGAATATCAAGTCTGATCATGAAGCTGATGTCTTTGGTCTAATAAGTAAAGTTGAACAAT 1278
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1199 AGAATATCAAGTCTGATCATGAAGCTGATGTCTTTGGTCTAATATGTAAAGTTGAACAGT 1258
Query 1279 TGAAGAAAGAGCGTTCTGTTCTCTGGCTTCGGGAATTTAAGGAGTGGATAGATCATCCAT 1338
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGAAGAAAGAGCGTTCTGTTCTTTGGCTTCGGGAATTTAAGGAGTGGATAGATCATCCAT 1318
Query 1339 CAGAGGATTTTGTGGATGTCAGCAAAAATGGGAGCAGTACTGATTCAGAGCAAAAGTACT 1398
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 CCGAGGATTTTGTGGATGTCAGCAAAAATGGGAGCAGTACTGATTCAGAGCAGAAGTACT 1378
Query 1399 ACACGAAGAATAGAAATGGCCCAAAACATCATGGTGAAACAATGAGATATGCACCAGGGC 1458
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 ACATGAAGAATAGAAATGGCCCAAAACATCATGGTGAAACAATGAGATATACACCAGGGC 1438
Query 1459 CTCTACCAGGTTTCCAAATTACAGATCTAAATCAGAAGCATCAAGCATTTTTTCTTGATG 1518
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTCTACCAAGTTTCCAAATTACAGATCTAAATCAGAAGCATCAAGCATTTTTTCTTGATG 1498
Query 1519 GGAAGCCAGATGAAAATGGAAACATGTCAACTTTGGATGCTACTCAGGTTATGACAGGAT 1578
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1499 GGAAGCCAGATGAAAATGGAAACATGTCAACTTTGGATGCTAGTCAGGATATGACAGGAT 1558
Query 1579 CATTTTCACCCTCATCACCCCCTCATTATCAAAAGGATGTCTTACACCGGCGTCAGAACC 1638
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CATTTTCACCTTCATCACCCCCTCATTATCAAAAGGATGTCTTACACCGGCGTCAGAACC 1618
Query 1639 TGGTGGAAGAAATCTTACAGATATCAGCAGATTCTTATTCAGTGGCTTCGTCTGATAGTA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGGTGGAAGAAATCTTACAGATATCAGCAGATTCTTATTCAGTGGCTTCGTCTGATAGTA 1678
Query 1699 GCTGCAGTGAAAATGAAAATTATGATTCTGAGCAATCAAATCCTGAACAGGATATGTTGA 1758
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1679 GCTGCAGTGAAAATGAAAATTATGATTCTGAGCAATCAAATCCTGAACAGGATACGTTGA 1738
Query 1759 AGGATCATCTTAGTGGGAATAGAGGAGAAGACACAAGCTTGCTTGACTCTCAACCAGAGA 1818
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AGGATCATCTTAGTGGCAATAGAGGAGAAGACACAAGCTTGCTTGACTCTCAACCAGAGA 1798
Query 1819 AGAGTAGCATCATAAAGTCTTGGAGGATAGAGGATTCGTTCAAAGCAAAGACCACTAATT 1878
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1799 AGAGTAGCATCATAAAGTCTTGGAAGATAGAGGATTCGTTCAAAGCGAAGACCACTAATT 1858
Query 1879 TTCTTTCTGGGCTACATAATAGTGAGCTTGCTTCTGGTGTTAACCAGATTTACCGTTGGT 1938
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TTCTTTCTGGGCTACATAAAAGTGAGCTTGCTTCTGGTGTTAACCAGATTTACCGTTGGT 1918
Query 1939 TTGACAAAAGGAAAAGCAAGAGGAAGCCTaaaaaaaGAGTTATTTCTCCACTGGAGGAGA 1998
||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1919 TTGACAAAAAGCAAAGCAAGAGGAAGCCTAAAAAAAGAAATGTTTCTCCACTGGAGGAGT 1978
Query 1999 ATAGTTTCATAAATAATGGAGAAACATCTCATAGAAGTGATGCAGATATCATTGATTCTT 2058
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 ATAGTTTCATAAAGAAAGGAGAAACATCTCATAGAAGTGATGCAGATATCATTGATTCTT 2038
Query 2059 GTGAAGATGAATATATTTCTGATCATTTTCAAGAAGGTTCCTTGACTACGGGTTGTAATA 2118
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2039 GTGAAGATGAATATATTTCTGATCATTTTCAAGAAGGTTCCTTGACTACAGGTTGTAATA 2098
Query 2119 GTAAGAGAAGTACTAGATTTTTGGAAACTGAAAAATCCCTTGAAGGAATGGATGGTCTAG 2178
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2099 GTAAGAGAAGTACTAGATTTTTGGAAACTGAAAAATCCCTTGAAGGAATGGGTGGTCTAG 2158
Query 2179 TGGAAGAATTTTTTACAACGACACTGTCAGATTCCAGCATTAATGAGACTTGTAGGATTT 2238
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2159 TGGAGGAATTTTTTACAACGACACTGTCAGATTCCAGCAATGATGAGACTTGTAGGATTT 2218
Query 2239 ACGTTAGTTGTGATTGCATAATACAGCAAGAATCCACCTACAAGCAACGGGAAGTAGTGT 2298
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2219 ACGTTAGTTGTGATTGCATACTACAGCAAGAATCCACCTATAAGCAACGGGAAGTAGTGT 2278
Query 2299 TGCTGCTGAGTAGCCAAGAAATACTGTATGTGCTGCTCGTTGGTGTCTCCAGTGATTCAC 2358
||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||
Sbjct 2279 TGCTGCTGAGTAGCCAAGAAAAACTGTATGTGCTGCTCGTGGGTGTCTCCACTGATTTAC 2338
Query 2359 AAGAGAGCAATTTAAGTTTATTGTGTTCGCATACAATCGGTGATATACAAGACGTCTCAG 2418
||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2339 AAGAGAGCAGCTTAAGTTTATTGTGTTCGCATACAATCGGGGATATACGAGATGTCTCAG 2398
Query 2419 TTGGTCTAGGACTTCAGGTTGTGAGGCTACGCTTTAGGGAGGATGCAGAGTACATTTTCA 2478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2399 TTGGTCTAGGACTTCAGGTTGTGAGGCTACGTTTTAGGGAGGATGCAGAGTACATTTTCA 2458
Query 2479 TAACCGCGAGCATTGAAAAAACAACAGTTTTACTCAATATCATAAAATTATTGGATTCTC 2538
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2459 TGACGGCGAGCATTGAAAAAACAACAGTTTTACTCAATATCATAAAATTCTTGGATTATC 2518
Query 2539 AGGTTACAGAATCAAAATATTCTTTGAAGAGTTTGGAGAATGTTCAAGTGGAATTGTTTG 2598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 AGGTTACAGAATCAAAATTTTCTTTGAAGAGTTTGGAGAATGTTCAAGTGGAATTGTTTG 2578
Query 2599 AGAAAGAAATATGTAGTGGTTTGAAGCTGAGTATATTCCAGTATAATGTTCTCCATTTTC 2658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2579 AGAAAGAAATATGTAGTGGTTTGAAGCTGAGTATATTCCAGTATATTGTTCTCCATTTTC 2638
Query 2659 AGAGCAGCACTCTTGGAGAAGTGTCATGGCTTCCACGGTCACTCTTTGTGGCGGGTGGAC 2718
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 AGAGCAGCACTTTTGGAGAAGTGTCATGGCTTCCACGGTCACTCTTTGTGGCGGGTGGAC 2698
Query 2719 ATCTTTTCATATGCAATGAAGACTTCAGGCAGCTGAGTTTTCTGCCAACAGATG---CTT 2775
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2699 ATCTTTTCATATGCAATGAAGACTTCAGGCAACTGAGTTTTCTGCCAACAGATGATGCTT 2758
Query 2776 CTTCATCCCCATATTTCTCACTTGCCTCAAGCTGCTCCATCTCCGACATATTTGAGATGG 2835
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2759 CTTCATCCCCATATTTCTCACTTGACTCAAGCTGCTCCATCTCCGACATATTTGAGATGG 2818
Query 2836 TTGTTGAATCACGAGGAAGCTCATGCTTGTCACTGAAGATCAAGCAGAAGGATTCCACAT 2895
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 2819 TTGTTGAATCAAGAGGAAGCTCGTGCTTGTCACTGAAGGTCAAGCAGAAGGATTCCACAT 2878
Query 2896 ATCAAAGCAAACAAAAGAGGACAGTGAATGCAGTAACATGGAAGCTCAAGTTACTCAGCA 2955
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2879 TTCAAAGCAGCCAAAAGAGGACAGTGAATTCAGTAACATGGAAGCTCAAGTTACTCAGCC 2938
Query 2956 AC-GAGTGTGTACTGAAATTTGTGGCTCTAATCAATGGACTTCACCCAGAATCGACAGAA 3014
| |||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 2939 -CTGAGTGTGTACCCAAATTTGTGGCTCTAGTAAATGGACTTCACCCAGATTCGACAGAA 2997
Query 3015 TGCCCGTTGCTCGTAAGGCATTTGGGTGAGAAATGA 3050
| ||| ||| ||||||||||||||||||||| ||||
Sbjct 2998 TTCCCATTGTTCGTAAGGCATTTGGGTGAGAGATGA 3033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152658007549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5