BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929660
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 970 0.0
> AT3G17930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007
(InterPro:IPR021562); Has 236 Blast hits to 236 proteins
in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source:
NCBI BLink). | chr3:6142129-6143310 REVERSE LENGTH=815
Length=815
Score = 970 bits (525), Expect = 0.0
Identities = 586/615 (95%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 1 TGTTGTGGGTTAAACACAGAAATGGCTTCTTTACCGTTCGGAGTTTCGAATCTATGCAGA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 TGTTGTGGCTTAAACACAGAAATGGCTTCTTTACCGTTCGGAGTTTCGAATCTATGCAGA 103
Query 61 AATCAGGAGGTTCTGTCCGCGGT-TGTACGGATTCGTCCGGTCGGGCAACAAACCACAGG 119
||||||||||||||||| || || |||| || ||| |||||| |||| ||||||||||||
Sbjct 104 AATCAGGAGGTTCTGTCTGC-GTCTGTAAGGCTTCTTCCGGTTGGGCGACAAACCACAGG 162
Query 120 ATTCAGAGCTGCGAAGAAAGTCTTATATAGATTCGAGGGACATGGATTGTCGTCATCAGT 179
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 163 ATTCGGAGCTGCGAAGAAAGTCTTATATAGATTCGAGGGACATAGATTGTCATCATCAGT 222
Query 180 AGAAAAGAGAGAGAAACAAAGAATGAGATGTAGAGTGAGCTCAAACTCTACTGAAACTGA 239
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 223 AGAAAAGGGAGAGAAACAGAGAATGAGATGTAGAGTTAGCTCAAACTCTACTGAAACTGA 282
Query 240 AGACGATTCTGCCACAAAAACCAAGACGACGCCGTTTGGTTACACGAGGAAGGATGTTAT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGACGATTCTGCTACAAAAACCAAGACGACGCCGTTTGGTTACACGAGGAAGGATGTTAT 342
Query 300 ATTGATAGGAGTGGGAGTGACTGCACTTGGTATCGGCCTAGAGAGTGGACTTGAGTATGT 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 343 ATTGATAGGAGTGGGAGTGACTGCACTTGGTATCGGGCTAGAGAGTGGACTTGAGTATGT 402
Query 360 GGGAGTAGATCCGTTGCAAGCAGGGAATGCTGTGCAGCTGATACTGGTGCTGGGTTTGAC 419
|||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 403 GGGAGTTGATCCGTTGCAAGCGGGGAATGCAGTACAGCTGATACTGGTGCTTGGTTTGAC 462
Query 420 TTTGGGTTGGATTTCGACTTATATCTTTAGAGTCGGTAACAAGGAGATGACTTATGCCCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTTGGGTTGGATTTCGACTTATATCTTTAGAGTCGGTAACAAGGAGATGACTTATGCCCA 522
Query 480 GCAACTTCGTGACTACGAGTCTCAAGTCATGCAGAAACGGCTGGAGAGCTTATCAGAGGC 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 523 GCAACTTCGTGACTACGAGTCTCAAGTCATGCAGAAACGATTGGAGAGCTTATCGGAGGC 582
Query 540 AGAGTTAGAGGCATTGATGGCACAGGTTGATGAAGAGAAGACCAAGGTTGAGTAGGTTCT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGAGTTAGAGGCATTGATGGCACAGGTTGATGAAGAGAAGACCAAGGTTGAGTAGGTTC- 641
Query 600 CTGGCCCATTGTGTT 614
|| || ||||||||
Sbjct 642 CT--CC-ATTGTGTT 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5