BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929662 Length=678 Score E Sequences producing significant alignments: (Bits) Value AT3G17950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 926 0.0 > AT3G17950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6146241-6147348 FORWARD LENGTH=885 Length=885 Score = 926 bits (501), Expect = 0.0 Identities = 630/689 (91%), Gaps = 22/689 (3%) Strand=Plus/Plus Query 1 TTTGAGACCAGCCATTACAGAGATGCAAGATCCTCATGTGCCATCTTCTCCCACCATCTC 60 ||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 49 TTTGAAACCAGCGATTACAGAGATGCAAGATCCTCATGTCCCATCTTCTCCAACTATCTC 108 Query 61 CTCCGTCTCTTCCTCCGATCTTGATACCGAGTCTACAGGATCGTTCTTCCATGACAGAAG 120 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 109 CTCCGTCTCTTCCTCCGATCTTGATACTGAGTCAACAGGATCGTTCTTCCATGACAGAAG 168 Query 121 CATCACACTGGGAACGCTTATGGGATTTAGTTTCACTGCAACCATGCCGATGCCATTTAG 180 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 169 CATCACACTTGGAACGCTTATGGGATTTAGTTTCACTGCAACTATGCCGATGCCATTTAG 228 Query 181 AGCTTCTTCGCACCGCCACGGCCACGTGTCACCCTCCGTCGCAATCTCACGAGCTTCCAG 240 ||| ||||| || ||| | |||||||||||| ||||||||||||||||||||||| || Sbjct 229 AGCCTCTTC--AC-GCC--G-CCACGTGTCACCTTCCGTCGCAATCTCACGAGCTTCTAG 282 Query 241 CTCCAATGCAAGACGCCACCACCAGAGAAAGCGTCCTCCTTTAAATTCGGCTGAGCCTCA 300 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | Sbjct 283 CTCCAATGCAAGACGCAACCACCAGAGAAAGCGTCCTCCTTCAAATTCGGCTGAGCCTGA 342 Query 301 TCAGCGGCATCGCCGTCGCAAGTGGTGGCGCTTTTGCCGAGATGACGATAACGACGCCG- 359 | || |||||||| || || |||||||| |||||||||||||||||| ||||||||| Sbjct 343 GC--CG-CATCGCCGCCGTAAATGGTGGCGGTTTTGCCGAGATGACGATGACGACGCCGC 399 Query 360 -G-AA-T-----CCACCGTGCCACCGGAGATTCAAAGCGGTCATCGCTCGGGGAATATCT 411 | || | |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 400 CGGAAATGGAATCCACCGTGGAACAGGAGATTCAAAGCGGTCATCGCTCGGGGAGTATCT 459 Query 412 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 519 Query 472 GGGTGCGGTGGTGGCGCGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 531 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 GGATGCGGTGGTGGCACGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 579 Query 532 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGTTGAAGCTG-TTACCGGAGAAGGTACGC 590 |||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||| Sbjct 580 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGCTGAAG-TGGTTACCGGAGAAGGAACGC 638 Query 591 CGGTGGCCTCGGCTCTTTGTAGATTCCCGGTTTCTTTAACCGGTATATGCAGTGGTGGCG 650 |||| ||| || | ||||||||||| ||||| |||||||||||||||||||| ||||| | Sbjct 639 CGGTAGCCACGTCCCTTTGTAGATTTCCGGTATCTTTAACCGGTATATGCAGCGGTGGTG 698 Query 651 GAGGAT-AATTACGTCGGTTCATGTGTGT 678 |||||| ||| |||||||||||||||||| Sbjct 699 GAGGATGAAT-ACGTCGGTTCATGTGTGT 726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32802897991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5