BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929662
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 926 0.0
> AT3G17950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to
63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:6146241-6147348 FORWARD LENGTH=885
Length=885
Score = 926 bits (501), Expect = 0.0
Identities = 630/689 (91%), Gaps = 22/689 (3%)
Strand=Plus/Plus
Query 1 TTTGAGACCAGCCATTACAGAGATGCAAGATCCTCATGTGCCATCTTCTCCCACCATCTC 60
||||| |||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 49 TTTGAAACCAGCGATTACAGAGATGCAAGATCCTCATGTCCCATCTTCTCCAACTATCTC 108
Query 61 CTCCGTCTCTTCCTCCGATCTTGATACCGAGTCTACAGGATCGTTCTTCCATGACAGAAG 120
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 109 CTCCGTCTCTTCCTCCGATCTTGATACTGAGTCAACAGGATCGTTCTTCCATGACAGAAG 168
Query 121 CATCACACTGGGAACGCTTATGGGATTTAGTTTCACTGCAACCATGCCGATGCCATTTAG 180
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 169 CATCACACTTGGAACGCTTATGGGATTTAGTTTCACTGCAACTATGCCGATGCCATTTAG 228
Query 181 AGCTTCTTCGCACCGCCACGGCCACGTGTCACCCTCCGTCGCAATCTCACGAGCTTCCAG 240
||| ||||| || ||| | |||||||||||| ||||||||||||||||||||||| ||
Sbjct 229 AGCCTCTTC--AC-GCC--G-CCACGTGTCACCTTCCGTCGCAATCTCACGAGCTTCTAG 282
Query 241 CTCCAATGCAAGACGCCACCACCAGAGAAAGCGTCCTCCTTTAAATTCGGCTGAGCCTCA 300
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct 283 CTCCAATGCAAGACGCAACCACCAGAGAAAGCGTCCTCCTTCAAATTCGGCTGAGCCTGA 342
Query 301 TCAGCGGCATCGCCGTCGCAAGTGGTGGCGCTTTTGCCGAGATGACGATAACGACGCCG- 359
| || |||||||| || || |||||||| |||||||||||||||||| |||||||||
Sbjct 343 GC--CG-CATCGCCGCCGTAAATGGTGGCGGTTTTGCCGAGATGACGATGACGACGCCGC 399
Query 360 -G-AA-T-----CCACCGTGCCACCGGAGATTCAAAGCGGTCATCGCTCGGGGAATATCT 411
| || | |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 400 CGGAAATGGAATCCACCGTGGAACAGGAGATTCAAAGCGGTCATCGCTCGGGGAGTATCT 459
Query 412 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGA 519
Query 472 GGGTGCGGTGGTGGCGCGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 531
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GGATGCGGTGGTGGCACGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTT 579
Query 532 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGTTGAAGCTG-TTACCGGAGAAGGTACGC 590
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||
Sbjct 580 CGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGCTGAAG-TGGTTACCGGAGAAGGAACGC 638
Query 591 CGGTGGCCTCGGCTCTTTGTAGATTCCCGGTTTCTTTAACCGGTATATGCAGTGGTGGCG 650
|||| ||| || | ||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 639 CGGTAGCCACGTCCCTTTGTAGATTTCCGGTATCTTTAACCGGTATATGCAGCGGTGGTG 698
Query 651 GAGGAT-AATTACGTCGGTTCATGTGTGT 678
|||||| ||| ||||||||||||||||||
Sbjct 699 GAGGATGAAT-ACGTCGGTTCATGTGTGT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5