BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929670
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18040.1 | Symbols: MPK9 | MAP kinase 9 | chr3:6174719-61784... 2584 0.0
> AT3G18040.1 | Symbols: MPK9 | MAP kinase 9 | chr3:6174719-6178465
FORWARD LENGTH=1929
Length=1929
Score = 2584 bits (1399), Expect = 0.0
Identities = 1496/1542 (97%), Gaps = 9/1542 (1%)
Strand=Plus/Plus
Query 42 AGGTTGCACTGGAGACTGAGTTCTTTACAGAATACGGTGAAGCCAGCCGATACCAAATCC 101
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 98 AGGTTGCACTGGAGACTGAGTTCTTTACAGAATACGGTGAAGCTAGCCGATACCAAATCC 157
Query 102 AAGAAGTTATAGGGAAAGGAAGTTACGGGGTTGTGGCATCTGCAATTGACACACATTCAG 161
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 158 AAGAAGTTATAGGGAAAGGAAGTTACGGTGTTGTGGCATCTGCAATCGACACACATTCAG 217
Query 162 GCGAAAAGGTTGCCATTAAGAAAATCAATGATGTGTTTGAGCACGTCTCTGATGCAACGC 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 GCGAAAAGGTTGCCATTAAGAAAATCAATGATGTGTTTGAGCACGTCTCTGATGCAACGC 277
Query 222 GGATTCTAAGAGAGATCAAGCTTCTCAGGTTGCTCCGCCATCCTGATATAGTGGAGATAA 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GGATTCTAAGAGAGATCAAGCTTCTCAGGTTGCTCCGCCATCCTGATATAGTGGAGATAA 337
Query 282 AGCATGTAATGCTTCCTCCTTCACGCCGTGAGTTCAGAGACATTTATGTTGTTTTCGAGC 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AGCATGTAATGCTTCCTCCTTCACGCCGTGAGTTCAGAGACATTTATGTTGTTTTCGAGT 397
Query 342 TGATGGAATCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TGATGGAATCAGATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACT 457
Query 402 ACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTTATACACACAGCTAATGTGT 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 458 ACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTCATACACACAGCTAATGTGT 517
Query 462 TTCATCGTGATTTGAAGCCTAAAAATATTCTAGCTAACTCTGATTGCAAGTTGAAGATTT 521
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 518 TTCATCGTGATTTGAAGCCTAAAAATATTCTAGCCAACTCTGATTGCAAGTTGAAGATTT 577
Query 522 GCGACTTTGGGCTTGCTCGAGTCTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTG 581
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 578 GCGACTTTGGGCTTGCTCGAGTGTCCTTTAATGATGCACCTTCGGCTATATTCTGGACTG 637
Query 582 ACTATGTTGCTACAAGATGGTACCGTGCACCGGAACTTTGTGGCTCTTTCTTCTCCAAAT 641
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 638 ACTATGTTGCTACAAGATGGTACCGTGCGCCAGAACTTTGTGGCTCTTTCTTCTCCAAAT 697
Query 642 ATACTCCTGCGATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTTACTGGGA 701
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 698 ATACTCCTGCCATTGATATATGGAGCATAGGATGCATATTTGCAGAAATGCTCACTGGGA 757
Query 702 AGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTG 817
Query 762 GTACTCCTCCTCCCGAAGCTATTTCAAGGATTCGTAATGAAAAGGCGAGGAGGTATCTCG 821
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 818 GTACTCCTCCTCCCGAAGCTATTGCAAGGATTCGTAATGAAAAGGCGAGGAGATATCTCG 877
Query 822 GCAATATGAGGAGAAAACCACCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCGT 881
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 878 GCAATATGAGGAGAAAACCGCCAGTTCCATTCACTCACAAATTTCCTCATGTAGACCCAT 937
Query 882 TGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCC-TACAGCT 940
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 938 TGGCCCTTCGCTTACTGCACCGTCTTCTTGCATTTGATCCCAAAGACCGTCCCT-CAGCT 996
Query 941 GAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGTTGATCGGGAACCATCT 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GAAGAGGCACTGGCAGATCCTTACTTCTATGGTCTGGCAAACGTTGATCGGGAACCATCT 1056
Query 1001 ACTCAACCGATTCCAAAACTCGAGTTTGAGTTTGAAAGAAGGAAGATTACAAAAGAAGAT 1060
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1057 ACTCAACCGATTCCGAAACTCGAGTTTGAGTTTGAAAGAAGGAAGATAACAAAAGAAGAT 1116
Query 1061 GTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGTTGCAAGAATAT 1120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1117 GTGAGAGAATTGATCTACAGAGAGATATTAGAGTATCATCCTCAGATGCTGCAAGAATAT 1176
Query 1121 CTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTTAAGAGA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTTAAGAGA 1236
Query 1181 CAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAGAGGCTCACCTCTTCAACGG 1240
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1237 CAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAAAGGCTCACCTCTTCAACGC 1296
Query 1241 CAACACGCTTCTTTGCCTAGGGAGAGAGTCCCTGCTCCTAAGAAAGAGAATGGATCACAT 1300
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1297 CAACACGCTTCCTTGCCTAGAGAGCGAGTCCCTGCTCCTAAGAAAGAGAATGGATCACAT 1356
Query 1301 AATCACGATATCGAGAACAGATCCACAGCGTCTTTAGCCACGACCCTCGAAAGCCCTCCA 1360
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1357 AATCACGATATCGAGAACAGATCCATAGCGTCTTTAGTCACGACCCTCGAAAGCCCTCCA 1416
Query 1361 ACGTCACAACACGAGGGTTCAGACTACAGGAATGG-AGTGAGCCAGACGGGTTACAGTGC 1419
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| ||
Sbjct 1417 ACGTCACAACACGAGGGGTCAGACTACAGGAATGGGAC-GAGCCAGACGGGTTACAGCGC 1475
Query 1420 TCGCAGCTTGCTGAAAAGTGCCAGCATCAGTGCATCTAAATGCATTGGCGTGAAACAAAG 1479
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1476 TCGCAGCTTGCTGAAAAGTGCCAGCATCAGTGCATCTAAATGCATTGGCATGAAACCAAG 1535
Query 1480 AAACAAGTCCGAGCAAGGTGAATCGAACAATGATACGGTTGATGCTTTGTCTCAAAAGGT 1539
||||||||||||| | || ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1536 AAACAAGTCCGAGTACGGGGAATCAAACAATGATACGGTTGATGCTCTGTCTCAAAAGGT 1595
Query 1540 TGCGGCTCTCCACACTTGA-TT----CAGAGATTGGGGATTG 1576
|||||||||||||||||| || ||||||||| ||||||
Sbjct 1596 CGCGGCTCTCCACACTTGACTTGTTTCAGAGATTGAGGATTG 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5