BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929671
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1472 0.0
> AT3G18050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G28100.1);
Has 67 Blast hits to 66 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6180859-6182854
FORWARD LENGTH=1341
Length=1341
Score = 1472 bits (797), Expect = 0.0
Identities = 975/1056 (92%), Gaps = 31/1056 (3%)
Strand=Plus/Plus
Query 4 TGTCTCCAT-TGTTCCGGCGATGTTCCAACACGCGCCTTCTTCCATTT-CC-C-TCATCG 59
||||||| | |||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 54 TGTCTCC-TCTGTTCCGGCGATGTTCCAACACGCGCCTTCTTCCATTTCCCTCATCATCA 112
Query 60 TCTTCTTCTTCACCATTCTATCACCCGTTTCACCAAACCCAGAACCGGTCACAGTCCAGC 119
||||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 113 TCTTCCTCTTCACCATTCTATCACCCGTTT---C--A-CCTGAACCGGTCACAGTCCAGC 166
Query 120 CATTCCGGGTCAAATCATCCCCACCCGCCACCATACCCGCTTTCCCGGAGCAATCCGATT 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 167 CATTCCGGGTCAAATCATCCCCACCCGCAACCATACCCGCTTTCCCGGAGCAATCCGATT 226
Query 180 TCTCCGGCTGCCCACTCGATTTACCAGAAGACCTCTTCCACGGCATCAAATCAGCTTGCA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 227 TCTCCGGCTGCCCACTCGATTTACCAGAAGACCTCTTCCACGGCATCAAGTCAGCTTGCA 286
Query 240 GTGGTAAAAAGCTCCACAAAGGAAGATGTTGCCCCGTACTAGGCGCGTGGCTCTACTCTG 299
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 287 GCGGCAAAAAGCTCCACAAAGGAAAATGTTGCCCCGTACTAGGCGCGTGGCTCTACTCTG 346
Query 300 CTTACTCAACCACAGCTCTGAGCCGTTCCATTTCCGCCGCCGCCAGAAACGCATCCTCCT 359
||||||||||||| ||||| |||||||| |||||||||||||| |||||| |||||||||
Sbjct 347 CTTACTCAACCACTGCTCTAAGCCGTTCGATTTCCGCCGCCGCAAGAAACTCATCCTCCT 406
Query 360 CCTCCGCCGCGATAACGACGCCTGAAGAAGATATGCCTTTGCTTCCCGATGACTCGGAGA 419
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CCTCCGCCGCGGTAACGACTCCTGAAGAAGATATGCCTTTGCTTCCCGATGACTCGGAGA 466
Query 420 CTTGTGTTGACGGATTGGGGAAGTCGCTGAGACAGAGAGGGATTGAGCTCACGAGACCGA 479
|||| ||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 467 CTTGCGTTGACGGATTAGGGAAATCTCTGAGGCAGAGAGGGATTGAGCTCACTAGACCGA 526
Query 480 ACGAGACGTGCGACGTCGTTTACTGCTACTGTGGAATCAGATTGCATCCGTTGAGCTGCT 539
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 527 ACGAGACTTGCGACGTCGTTTACTGCTACTGTGGAATCAGATTGCATCCGTTGAGCTGTT 586
Query 540 CCGAGGCTTTTAAATTGAACGAAGAAGGGAGGCTCGTTGGAGACGAGAGGGTTGATAGAT 599
|||||||||||| | |||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 587 CCGAGGCTTTTAGAGTGAATGATGAAGGGAGACTCGTTGGAGACGAGAGAGTTGATAGAT 646
Query 600 TAGAGACTGATTGTTTGAGTGGAAGCCACAACAATGCTGATAGATTCTCACCTCTACTTG 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 647 TAGAGACTGATTGTTTGAGTGGAAGCCACAACAATGCTGATGGATTCTCACCTCTTCTTG 706
Query 660 GTTGCAACAAGTGCTTGAACAGTCTCTATAAGCTAAATCCGAAGAAAACTTCAGGGACAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GTTGCAACAAGTGCTTGAACAGTCTCTATAAGCTAAATCCGAAGAAAACTTCAGGGACAA 766
Query 720 GAAACCCATCAAAAGAAGATCGAAACAGAACAGCAAAGATGCACAACAAAGACTGTGTCC 779
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GAAACCCATCAAAGGAAGACCGAAACAGAACAGCAAAGATGCACAACAAAGACTGTGTCC 826
Query 780 TCATGGGTCTCACTTGGCTTCTCGCTAAGAACCGTACTGCTTACTTTCCA-ACTGTAACT 838
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 827 TCATGGGTCTCACTTGGCTTCTCGCTAAGAACCGTACTGCTTA-TTTCCCCACTGTCACT 885
Query 839 TCCGTCCTCCGAGCCGTCATGCTCAACCACGACGGTGTGCCACGTTCATGTGCTCTCGGC 898
|| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 886 TCTGTCCTCCGAGCCGTCATGCTGAACCACGATGGCGTGCCACGTTCATGTGCTCTCGGC 945
Query 899 AGCGACGGCATGCCCTTAACCGTCGACTCTTCGGAATTCTCCAGCGGTTCGCCAACTTCA 958
|||||||||||||| ||| ||||||| ||||| |||||||||| ||| ||||||||||||
Sbjct 946 AGCGACGGCATGCCTTTAGCCGTCGATTCTTCCGAATTCTCCAACGGCTCGCCAACTTCA 1005
Query 959 CTTCAGTATTGGCACCACTT--T----TT---ACTATACAGCGTCATCACATTAGTCCTA 1009
||||||||| ||||||||| | || ||| |||||||| |||||||||||||||
Sbjct 1006 CTTCAGTATCCGCACCACTTGGTCCACTTCTTACTTTACAGCGTTATCACATTAGTCCTA 1065
Query 1010 -------C-TG-TGACGTGGCACACCGTGGTTGGAT 1036
| || |||||||||||||| |||||||||
Sbjct 1066 ATAAGGTCGTGGTGACGTGGCACACCATGGTTGGAT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5