BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929672
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18060.1 | Symbols: | transducin family protein / WD-40 rep... 3037 0.0
> AT3G18060.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:6183773-6187074 FORWARD LENGTH=2223
Length=2223
Score = 3037 bits (1644), Expect = 0.0
Identities = 1800/1877 (96%), Gaps = 4/1877 (0%)
Strand=Plus/Plus
Query 1 TCTCTGCAAAGTCCTCTCGATTTTGATGGAGCTTTCCGAAACCTATGCTTGCGTTCCATC 60
|||||||||||| | |||| || ||||||||||||| |||||||||||||| ||||||||
Sbjct 85 TCTCTGCAAAGT-C-CTCGGTTCTGATGGAGCTTTCAGAAACCTATGCTTGTGTTCCATC 142
Query 61 GACGGAGAGAGGTCGCGGAA-TCTTGATCTCCGGTGACTCGAAGTCCGACACCATCCTCT 119
||||||||||||| | |||| || ||||||| ||| ||||||||||||| ||||||||||
Sbjct 143 GACGGAGAGAGGTAGAGGAATTC-TGATCTCTGGTAACTCGAAGTCCGATACCATCCTCT 201
Query 120 ACACTAATGGTCGATCCGTCGTGACTCTCGACCTCAACAATCCTTTAAAGGTCTCTATCT 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 202 ACACTAATGGTCGATCCGTCGTGACTCTCGACCTTAACAATCCTTTAAAGGTCTCTATCT 261
Query 180 ATGGTGAGCACGCTTACCCAGCTACTGTGGCGCGATATTCCCCGAACGGAGAGTGGATCG 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 262 ATGGTGAGCACGCTTACCCAGCTACTGTGGCGCGATATTCTCCGAACGGAGAGTGGATCG 321
Query 240 CGTCGGGTGATGTGTCGGGGACTGTTAGAATCTGGGGGGCTTACAACGATCATGTGTTGA 299
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 322 CGTCTGGTGATGTGTCGGGGACTGTTAGAATCTGGGGAGCTTACAACGATCATGTGTTGA 381
Query 300 AGAAAGAGTTTAAGGTTTTGGCTGGTCGGATCGATGATCTTCAGTGGTCGGCTGATGGGA 359
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 382 AGAATGAGTTTAAGGTTTTGGCTGGTCGGATCGATGATCTTCAGTGGTCTGCTGATGGGA 441
Query 360 TGAGGATCGTTGCTTCTGGTGATGGCAAAGGGAAATCTCTTGTTCGTGCTTTCATGTGGG 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 442 TGAGGATCGTTGCTTCTGGTGATGGCAAAGGCAAATCTCTTGTTCGTGCTTTCATGTGGG 501
Query 420 ATTCAGGATCAAATGTGGGAGAGTTTGATGGACATTCTAGGCGAGTTCTTAGCTGTGCTA 479
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 502 ATTCAGGATCAAATGTGGGAGAGTTTGATGGTCATTCTAGGAGAGTTCTTAGCTGTGCTA 561
Query 480 TCAAGCCAACTAGACCGTTCCGTATTGTAACTTGTGGGGAAGATTTTCTGGTGAATTTTT 539
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 562 TCAAGCCAACTAGGCCGTTCCGTATTGTAACTTGTGGGGAGGATTTTCTGGTGAATTTCT 621
Query 540 ATGAAGGTCCTCCTTTTAAGTTCAAGCTCTCAAGCAGAGAGCATTCCAACTTTGTCAACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 ATGAAGGTCCTCCTTTTAAGTTCAAGCTCTCAAGCAGAGAGCATTCCAACTTTGTCAACT 681
Query 600 GTGTGAGGTTTGCACCAGATGGAAGTAAGTTCATTACTGTGAGTTCAGATAAAAAGGGAA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 682 GTGTGAGGTTTGCACCAGATGGAAGTAAGTTCATTACTGTGAGTTCAGATAAGAAGGGAA 741
Query 660 TCATATATGATGGAAAGACTTGTGAGATACTGGGAGAACTCTCTTCTGATGATGGGCATA 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 742 TCATATATGATGGAAAGACTTGTGAGATACTGGGAGAACTGTCTTCTGATGATGGGCATA 801
Query 720 AAGGTAGCATCTATGCAGTTAGCTGGAGTCCTGATGGTCAACAGGTGCTCACTGTTTCCG 779
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 802 AAGGTAGCATCTATGCAGTCAGCTGGAGTCCTGATGGTAAACAGGTGCTCACTGTTTCCG 861
Query 780 CCGACAAGTCAGCCAAAGTATGGGATATATCGGACAACGGTAGCGGAACATTGAAGACTA 839
| ||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |
Sbjct 862 CAGACAAGTCAGCCAAAATATGGGATATATCAGACAACGGTAGTGGATCATTGAATACAA 921
Query 840 CATTGAATTGTCCTGGATCATCAGGTGGAGTGGACGATATGCTTGTTGGGTGTCTGTGGC 899
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 922 CATTGAACTGTCCTGGATCATCAGGTGGAGTAGACGATATGCTTGTTGGGTGTCTGTGGC 981
Query 900 AGAACGATCATATTGTCACTGTTTCTCTAGGTGGTACAATCAGCATATTCTCAGCAAGCG 959
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 982 AGAACGATCATATTGTCACTGTTTCTCTAGGTGGCACAATCAGCATATTCTCAGCAAGCG 1041
Query 960 ATCTTGATAAATCCCCCTTTCAGTTTTCGGGGCACATGAAGAACGTCTCTTCCTTAGCTG 1019
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1042 ATCTGGATAAATCCCCCTTTCAGTTTTCGGGACACATGAAGAACGTCTCTTCCTTAGCTG 1101
Query 1020 TGCTTAAAGGAGCCGCTGACTACATATTATCCGGTAGTTATGATGGACTGATATGTAAAT 1079
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TGCTTAAAGGAAACGCTGATTACATATTATCCGGTAGTTATGATGGACTGATATGTAAAT 1161
Query 1080 GGATGCTAGGCCGTGGTTTTTGCGGTAAATTGCACCGGACACAAAACTCTCAAATAAAGT 1139
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1162 GGATGCTAGGCCGTGGTTTTTGCGGTAAATTGCAGCGGACACAAAACTCTCAAATAAAGT 1221
Query 1140 GCTTTGCTGCTCATGAAGAAGAGATCGTGACCTCTGGATATGACAATAAGATATCCAGGA 1199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GCTTTGCTGCCCATGAAGAAGAGATCGTGACCTCTGGATATGACAATAAGATATCCAGGA 1281
Query 1200 TTTCCTATAAAGACGATCAATGCACAAACGAAGAGTCTGTCGACATTGGAAACCAACCAA 1259
| ||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct 1282 TCTCCTATAAAGATGATCAATGCACAAATGAAGAGTCTATCGACATTGGAAATCAACCAA 1341
Query 1260 AGGATCTAAGCCTTGCACCACTCTCACCCGATCTCCTTCTGGTGACATTTGAGTCAGGAG 1319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1342 AGGATCTAAGCCTTGCACCACTCTCACCCGATCTCCTTCTGGTGACCTTTGAGTCAGGAG 1401
Query 1320 TTGTGTTTCTCCGTGATGGGAAAGTAGTGTCAACCATCAACCTTGGATTCACTGTCACTG 1379
|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1402 TTGTGTTTCTTCGTGATGGGAAAGTAGTGTCAACCATCAACCTTGGGTTCATTGTCACTG 1461
Query 1380 CTTTGGCAGTAACACCTGATGGAACCGAAGCCATCATCGGTGGCCAAGACGGTAAACTCC 1439
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1462 CTTTGGCAGTAACACCTGATGGAACCGAAGCTGTCATCGGTGGCCAAGACGGTAAACTCC 1521
Query 1440 ATCTGTATTCTATTAATGGCGACTCCCTCACCGAGGAAGCAGTTCTCGAGAAACACAGAG 1499
|| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1522 ATTTGTATTCTATTAATGGTGACTCCCTCACCGAGGAAGCAGTTCTCGAGAGACACAGAG 1581
Query 1500 GCGCCATCAGTGTTATACGTTACTCTCCGGATCTCTCTATGTTTGCATCAGGTGATTTGA 1559
|||||||||| || |||||||||||||| ||| | |||||||||||||||| ||||||||
Sbjct 1582 GCGCCATCAGCGTCATACGTTACTCTCCAGATTTGTCTATGTTTGCATCAGCTGATTTGA 1641
Query 1560 ACAGAGAAGCAGTTGTGTGGGACAGAGTCTCCAAAGAGATGAAACTCAAGAATATGCTGT 1619
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 1642 ACAGAGAAGCAGTTGTGTGGGACAGAGTCTCCAGAGAGATGAAACTCAAGAACATGTTGT 1701
Query 1620 ACCATAGCGCCCGCATAAACTGCTTAGCTTGGTCTCCAAACAGCACTATGGTTGCTACAG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1702 ACCATAGCGCCCGCATAAACTGCTTAGCTTGGTCTCCAAACAGCACTATGGTTGCCACAG 1761
Query 1680 GATCCTTAGACACCTGTGTGATTGTGTATGAAGTGGACAAACCTGCTGCTTCACGCATGA 1739
||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1762 GATCCTTGGACACGTGTGTGATTGTGTATGAAGTGGACAAACCTGCTTCGTCACGCATGA 1821
Query 1740 CAATAAAAGGAGCTCACTTAGGTGGAGTATATGGTCTGGGTTTTGCTGATGATTCCCATG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 CAATAAAAGGAGCTCACTTAGGTGGAGTATATGGTCTGGGTTTTGCTGATGATTCCCATG 1881
Query 1800 TAGTGAGTTCTGGTGAAGATGCTTGTATCCGCGTCTGGAGCTTAACTCCGCAATAAGACT 1859
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1882 TAGTGAGTTCTGGTGAAGATGCTTGTATCCGCGTCTGGAGCTTTACTCCTCAATAAGACT 1941
Query 1860 TGAGGTAAATTATAAAG 1876
||| |||||||||||||
Sbjct 1942 TGACGTAAATTATAAAG 1958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5