BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929678
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18130.1 | Symbols: RACK1C_AT | receptor for activated C kin... 1456 0.0
AT1G18080.1 | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/W... 787 0.0
> AT3G18130.1 | Symbols: RACK1C_AT | receptor for activated C kinase
1C | chr3:6210904-6212433 REVERSE LENGTH=1248
Length=1248
Score = 1456 bits (788), Expect = 0.0
Identities = 983/1075 (91%), Gaps = 22/1075 (2%)
Strand=Plus/Plus
Query 1 CGCTCTGTTACGCCATTTTCGTGAGTAAGAAGAAGAAACCCTAAGAGTCTCTCCCCCAAA 60
||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 8 CGCTCTGTTACGCCATTTTCGTGAGTAAGAAGAAGAAACCC-----G----------AAA 52
Query 61 ACCTCTAACCATGGCCGAGGGACTCGTATTGAAGGGCACTATGCGGGCTCACACCGACAT 120
||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 53 ACCTCAAACCATGGCCGAGGGACTCGTATTGAAGGGCATTATGCGCGCCCACACCGACAT 112
Query 121 GGTCACCGCCATCGCTACACCAATCGACAATTCCGACATCATCGTCACAGCGTCGCGTGA 180
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 113 TGTCACGGCCATCGCTACGCCGATCGACAATTCCGACATCATCGTCACAGCGTCGCGTGA 172
Query 181 CAAATCCATCATCCTCTGGAAACTCACCAAGGACGACAAGTCTTACGGTGTTGCTCAGCG 240
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 173 CAAATCCATCATCCTCTGGAAACTCACAAAGGACGATAAGTCTTACGGTGTTGCTCAGCG 232
Query 241 TAGGCTCACAGGTCACTCTCACTTCGTCGAAGATGTTGTTCTCTCATCGGACGGTCAGTT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 233 TAGGCTCACAGGTCACTCTCACTTCGTGGAAGATGTTGTTCTCTCATCGGACGGTCAGTT 292
Query 301 TGCACTCTCCGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTCGCTACTGGTGTCTC 360
||||||||||||||||||||||||||||||||||||||||||||| || || || | |
Sbjct 293 TGCACTCTCCGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTTGCCACGGGAGAAAC 352
Query 361 CACTCG-CAGATTCGTCGGACACACGAAAGATGTGCTCTCTGTAGCATTCTCTGTTGATA 419
||||| | ||||||| || || |||||||||||||||||||| ||||||||| |||||
Sbjct 353 AACTCGTC-GATTCGTTGGTCATACGAAAGATGTGCTCTCTGTTGCATTCTCTACTGATA 411
Query 420 ACCGTCAGATCGTATCAGCGTCTCGTGACCGTACGATCAAGCTGTGGAACACACTCGGTG 479
|||| |||||||| || || |||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 412 ACCGGCAGATCGTGTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGGTG 471
Query 480 AATGCAAGTACACGATCTCTGAGCAAGGAGATGGTCACAAGGAATGGATTAGCTGTGTGA 539
| || ||||| || |||||| | |||| |||||||||||||||||| |||| ||||| |
Sbjct 472 AGTGTAAGTATACCATCTCT--G-AAGGTGATGGTCACAAGGAATGGGTTAGTTGTGTTA 528
Query 540 GGTTTAGCCCTAACACGCTTGTGCCTACCATTGTTTCTGCTTCTTGGGATCACACCGTGA 599
||||||| ||||| || ||||| || || ||||| ||||||||||||||| | || ||||
Sbjct 529 GGTTTAGTCCTAATACTCTTGTACCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGA 588
Query 600 AAGTCTGGAATCTCCAGAACTGTAAGCTGAGGAACTCTCTTGTTGGTCACTCTGGTTACC 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGTTTGGAATCTCCAGAACTGTAAGCTGAGGAACTCTCTTGTTGGTCACTCTGGTTACC 648
Query 660 TCAACACTGTGGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTG 719
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCAACACTGTTGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTG 708
Query 720 TTATCTTGTTGTGGGATTTGGCTGAAGGAAAGAAG-TTGTATTCGCTTGAGGCTGGCTCG 778
||||||||||||||||||||||||||||||||||| || || ||||||||||| || |||
Sbjct 709 TTATCTTGTTGTGGGATTTGGCTGAAGGAAAGAAGCTT-TACTCGCTTGAGGCGGGTTCG 767
Query 779 ATTATTCACTCGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGAAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATTATTCACTCGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGAAT 827
Query 839 AGCATTAAGATATGGGATCTTGAGAGCAAGTCTGTTGTTGAGGACTTGAAGGTTGATCTT 898
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AGCATTAGGATTTGGGATCTTGAGAGCAAGTCTGTTGTTGAGGACTTGAAGGTTGATCTC 887
Query 899 AAGGCTGAGGCAGAGAAGACTGATGGTGGTGTTGGAACTGGTAACCAGAAGAAGGTGATT 958
||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 888 AAGTCTGAGGCAGAGAAGAATGAAGGTGGTGTTGGAACTGGTAACCAGAAGAAGGTTATC 947
Query 959 TACTGCACAAGCTTAAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGAT 1018
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGAT 1007
Query 1019 GGAGTTGTCAGAGTCTGGGGTATTGGTCGTTACTAGAGACAGATGAAGAAGAAGA 1073
||||||||||| ||||||||||||||||||||||||||||| | |||| |||||
Sbjct 1008 GGAGTTGTCAGGGTCTGGGGTATTGGTCGTTACTAGAGACACAACAAGATGAAGA 1062
> AT1G18080.1 | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40
repeat-like superfamily protein | chr1:6222201-6224151
FORWARD LENGTH=1358
Length=1358
Score = 787 bits (426), Expect = 0.0
Identities = 814/1000 (81%), Gaps = 32/1000 (3%)
Strand=Plus/Plus
Query 71 ATGGCCGAGGGACTCGTATTGAAGGGCACTATGCGGGCTCACACCGACATGGTCACCGCC 130
||||| || |||||||| ||||||||||| ||||| || ||||| |||||||| || ||
Sbjct 125 ATGGCGGAAGGACTCGTTTTGAAGGGCACCATGCGTGCACACACTGACATGGTGACGGCA 184
Query 131 ATCGCTACACCAATCGACAATTCCGACATCATCGTCACAGCGTCGCGTGACAAATCCATC 190
||||| || |||||||| || | |||||||||||| |||| || || ||||||||||||
Sbjct 185 ATCGCCACCCCAATCGATAACGCAGACATCATCGTCTCAGCTTCCCGCGACAAATCCATC 244
Query 191 ATCCTCTGGAAACTCACCAAGGACGAC-AAGTCTTACGGTGTTGCTCAGCGTAGGCTCAC 249
|| | ||||||||||||||||||||| ||| | |||||||| |||||| | | |||||
Sbjct 245 ATTTTGTGGAAACTCACCAAGGACGACAAAG-CCTACGGTGTAGCTCAGAGGCGTCTCAC 303
Query 250 AGGTCACTCTCACTTCGTCGAAGATGTTGTTCTCTCATCGGACGGTCAGTTTGCACTCTC 309
||||||||||||||||| || |||||||||||||| || || || || || || || ||
Sbjct 304 TGGTCACTCTCACTTCGTTGAGGATGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTC 363
Query 310 CGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTCGCTACTGGTGTCTCCACTCGCAG 369
||| ||||||||||| ||||||||||| |||||||| ||| |||||||||||||||| ||
Sbjct 364 CGGCAGCTGGGACGGCGAGCTCCGTCTTTGGGATCTTGCTGCTGGTGTCTCCACTCGTAG 423
Query 370 ATTCGTCGGACACACGAAAGATGTGCTCTCTGTAGCATTCTCTGTTGATAACCGTCAGAT 429
|||||| |||||||| || || |||||||| || || ||||| | || |||||||||||
Sbjct 424 ATTCGTTGGACACACCAAGGACGTGCTCTCCGTCGCCTTCTCACTCGACAACCGTCAGAT 483
Query 430 CGTATCAGCGTCTCGTGACCGTACGATCAAGCTGTGGAACACACTCGGTGAATGCAAGTA 489
||| || || |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 484 CGTCTCTGCATCTCGTGACCGTACGATCAAGCTGTGGAACACTCTTGGTGAGTGCAAGTA 543
Query 490 CACGATCTCTGA-GCAAGGAGATGGTCACAAG-GAATGGATTAGCTGTGTGAGGTTTAGC 547
||| || || || | || || || ||| | || ||| ||||||| || || || |||
Sbjct 544 CACCATTTCAGAAGGT-GGTGAGGGACACC-GTGATTGGGTTAGCTGCGTCAGATTCAGC 601
Query 548 CCTAACACGCTTGTGCCTACCATTGTTTCTGCTTCTTGGGATCAC-ACCGTGAAAGTCTG 606
|||||||||||| ||| || ||||| |||||||| ||||| || ||||||||||| ||
Sbjct 602 CCTAACACGCTTCAGCCGACGATTGTATCTGCTTCGTGGGA-CAAGACCGTGAAAGTGTG 660
Query 607 GAATCTC-CAGAACTGTAAGCTGAGGAACT-CTCTTGTTGGTCACTCTGGTTACCTCAAC 664
||| || | |||||| ||||| || | | |||||| ||||||| | |||||| | | |
Sbjct 661 GAACCTTTC-GAACTGCAAGCTCAG-ATCGACTCTTGCTGGTCACACCGGTTACGTGAGC 718
Query 665 ACTGTGGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTGTTATC 724
||||||||||| || ||||||||||| || || || ||||| || ||||| |||||| |
Sbjct 719 ACTGTGGCTGTATCACCTGATGGTTCTCTTTGTGCAAGTGGAGGCAAAGACGGTGTTGTT 778
Query 725 TTGTTGTGGGATTTGGCTGAAGGAAAGAAG-TTGTATTCGCTTGAGGCTGGCTC-GATTA 782
||| |||||||||||||||| || |||||| || || || ||||| ||| ||| | | |
Sbjct 779 TTGCTGTGGGATTTGGCTGAGGGGAAGAAGCTT-TACTCTCTTGAAGCTAACTCTG-TGA 836
Query 783 TTCACT-CGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGA-ATAG 840
| || | | |||||||||||||| ||||| |||||| | |||||||| ||||| | || |
Sbjct 837 TCCA-TGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTCTGTGCTGCAACTGA-ACATGG 894
Query 841 CATTAAGATATGGGATCTTGAGAGCAAGT-CTGTTGTTGAGGACTTGAAGGTTGATCTTA 899
|||||||| ||||| |||||||||||| | |||||||||| |||||||||||||| |
Sbjct 895 TATTAAGATTTGGGACCTTGAGAGCAAGAGCA-TTGTTGAGGATTTGAAGGTTGATCTCA 953
Query 900 AGGCTGAGGCAGAGAAGACTGATG---GTGGTGTTGGAACTGGTAACCA-GAAGAAGGTG 955
|||||||||| || ||| |||| ||||| || ||| | ||| || ||||||
Sbjct 954 AGGCTGAGGCTGAAAAGGCTGACAACAGTGGTCCTG---CTGCCA-CCAAGAGGAAGGTT 1009
Query 956 ATTTACTGCACAAGC-TTAAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACAC 1014
||||||||||||||| |||| |||||| || ||||||||||| | ||||||||||||||
Sbjct 1010 ATTTACTGCACAAGCCTTAA-CTGGAGCGCTGATGGAAGCACCCTCTTCAGTGGTTACAC 1068
Query 1015 TGATGGAGTTGTCAGAGTCTGGGGTATTGGTCGTTACTAG 1054
|||||||| | ||||| |||||||||||||||||||||
Sbjct 1069 CGATGGAGTCATTAGAGTTTGGGGTATTGGTCGTTACTAG 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5