BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929690
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18190.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 2660 0.0
> AT3G18190.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:6232126-6234060 FORWARD LENGTH=1935
Length=1935
Score = 2660 bits (1440), Expect = 0.0
Identities = 1584/1655 (96%), Gaps = 3/1655 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCACTCGTAGTaaaaaaaaTGGCGGCGGTAGCAGCACCGATGGCTTCGAAGCCTC 60
|||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 79 CTCTCTCACTCGTAGT-AAAAAAATGGCGGCGGTAGCGGCACCAATGGCTTCGAAGCCCC 137
Query 61 GTGGATCTAAAGCAGAATCGTTCGTAGACAACAAGCGGAGAGAAGATATCCGATTCGCGA 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GTGGATCTAAAGCTGAATCGTTCGTAGACAACAAGCGGAGAGAAGATATCCGATTCGCGA 197
Query 121 ACATCAACTCTGCTCGCGCCGTCTCTGACGCCGTTCGTACGAGTTTGGGACCGAAAGGAA 180
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||
Sbjct 198 ACATCAACTCTGCTCGAGCAGTCTCTGACGCCGTCCGTACTAGTTTGGGACCGAAAGGAA 257
Query 181 TGGACAAGATGATTTCCACGGCGAACGGCGAGGTAATCATCACTAACGATGGAGCTACAA 240
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 258 TGGACAAGATGATTTCCACGGCGAACGGAGAGGTAATCATTACTAACGATGGAGCTACGA 317
Query 241 TCCTCAACAAGATGGAGGTTTTGCAGCCAGCGGCGAAGATGTTAGTCGAGCTTTCCAAAT 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCCTTAACAAGATGGAGGTTTTGCAGCCAGCGGCGAAGATGTTAGTCGAGCTTTCCAAAT 377
Query 301 CTCAAGATTCAGCCGCCGGAGATGGGACTACAACCGTCGTAGTCATCGCCGGTGCGCTTC 360
||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||
Sbjct 378 CTCAAGATTCAGCCGCCGGAGATGGTACCACAACTGTCGTAGTAATCGCCGGTGCGCTTC 437
Query 361 TCAAGGAGTGTCAATCGCTTCTCACAAACGGGATCCACCCTACTGTCATTTCAGATTCGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TCAAGGAGTGTCAATCGCTTCTCACAAACGGGATCCACCCTACTGTCATTTCAGATTCGC 497
Query 421 TTCACAAGGCTTGTGCTAAGGCGATAGATATCTTGACGGCCATGGCTAG-TCCGGTGGAG 479
|||||||||| |||| ||||||||| ||||| ||||| ||||||||| | ||| ||||||
Sbjct 498 TTCACAAGGCGTGTGGTAAGGCGATCGATATTTTGACTGCCATGGCT-GTTCCAGTGGAG 556
Query 480 CTCACTGACCGAGATTCACTTGTTAAATCTGCGAGCACGTCGCTTAACAGTAAGGTTGTT 539
|||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 557 CTCACTGATAGAGATTCACTTGTGAAATCTGCGAGCACATCGCTTAACAGTAAGGTTGTT 616
Query 540 AGTCAGTACTCTACATTGCTTGCTCCTTTAGCTGTAGATGCGGTTCTCTCTGTTATAGAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AGTCAGTACTCTACATTGCTTGCTCCTTTAGCTGTAGATGCGGTTCTCTCTGTTATAGAT 676
Query 600 CCGGAAAAGCCAGAGATTGTGGATTTGCGTGATATTAAGATTGTTAAGAAGCTTGGTGGG 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CCGGAAAAGCCTGAGATTGTGGATTTGCGTGATATTAAGATTGTTAAGAAGCTTGGTGGG 736
Query 660 ACTGTGGATGATACACATCCGGTGAAAGGTTTGGTTTTTGACAAGAAGGTTAGTCGTGCT 719
|||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||
Sbjct 737 ACTGTGGATGATACACATACTGTGAAAGGTTTGGTTTTTGATAAGAAGGTTAGCCGTGCT 796
Query 720 GCTGGTGGACCGACTCGTGTGGAGAATGCTAAGATCGCTGTGATTCAGTTCCAGATCTCA 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 797 GCTGGTGGACCGACTCGTGTGGAGAATGCTAAGATTGCTGTGATTCAGTTCCAGATCTCA 856
Query 780 CCTCCTAAGACTGATATCGAGCAGAGTATTGTTGTCTCTGATTATACTCAGATGGATAGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CCTCCTAAGACTGATATCGAGCAGAGTATTGTTGTCTCTGATTATACTCAGATGGATAGG 916
Query 840 ATCTTGAAAGAAGAGAGGAATTACATCTTGGGGATGATTAAGAAGATCAAAGCAACTGGT 899
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 917 ATCTTGAAAGAAGAGAGGAATTACATATTGGGGATGATTAAGAAGATCAAAGCAACTGGT 976
Query 900 TGTAATGTGTTGTTGATCCAGAAGAGTATTTTGAGGGATGCTGTTACTGATCTATCTCTT 959
|| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 977 TGCAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCAGTGACTGATCTATCTCTT 1036
Query 960 CACTATTTGGCTAAAGCTAAAATCATGGTTATCAAGGATGTAGAGAGAGATGAGATTGAA 1019
||||||||||| |||||||| || |||||||| |||||||| ||||||||||||||||||
Sbjct 1037 CACTATTTGGCCAAAGCTAAGATTATGGTTATTAAGGATGTTGAGAGAGATGAGATTGAA 1096
Query 1020 TTCGTCACCAAGACATTGAACTGCTTGCCAATCGCCAATATTGAGCATTTCAGAGCTGAG 1079
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1097 TTTGTCACCAAGACATTGAACTGCTTGCCTATCGCCAATATTGAGCATTTCAGAGCTGAG 1156
Query 1080 AAGCTTGGCCATGCTGATCTTGTTGAGGAAGCCTCCCTTGGAGATGGAAAGATTTTGAAG 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1157 AAGCTTGGCCATGCTGATCTTGTTGAGGAGGCCTCCCTTGGAGATGGAAAGATTTTGAAG 1216
Query 1140 ATCACTGGAATCAAGGACATGGGGAGAACTACTTCTGTTCTTGTTCGTGGCTCCAACCAG 1199
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1217 ATCACTGGTATCAAGGACATGGGGAGAACTACATCTGTTCTAGTTCGTGGCTCCAACCAG 1276
Query 1200 CTTGTTCTAGATGAAGCTGAAAGGAGTTTACATGATGCCTTATGTGTGGTTAGGTGTCTG 1259
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1277 CTTGTTCTAGATGAAGCTGAAAGGAGTTTACATGATGCCTTGTGTGTGGTTAGGTGTCTA 1336
Query 1260 GTGAGCAAGAGGTTCTTGATTGCAGGAGGTGGTGCACCAGAGATTGAGCTCTCTAGACAG 1319
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1337 GTGAGCAAAAGGTTTTTGATTGCAGGAGGTGGTGCACCAGAGATTGAGCTCTCAAGGCAG 1396
Query 1320 CTCGGTACTTGGGCTAAGGTTCTACATGGGATGGAAGGTTACTGTGTGAAGTCTTTCGCT 1379
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1397 CTCGGTGCTTGGGCTAAGGTGCTACATGGGATGGAAGGTTACTGTGTGAAGTCTTTTGCT 1456
Query 1380 GAAGCCCTCGAGGTTATTCCTTACACACTGGCCGAGAATGCAGGGTTAAACCCTATCGCC 1439
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1457 GAAGCTCTCGAAGTTATTCCTTACACACTAGCCGAGAATGCAGGGTTAAACCCTATCGCC 1516
Query 1440 ATTGTGACTGAACTCAGGAACAAGCATGCTCAAGGGGAAATCCATGCAGGGATCAATGTG 1499
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1517 ATTGTGACTGAACTCAGGAACAAGCATGCTCAAGGGGAAATCAACGCAGGGATCAATGTG 1576
Query 1500 AGGAAAGGACAGATCACTAACATATTGGAGGAAAATGTTGTTCAGCCCCTGCTTGTGAGT 1559
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1577 AGGAAAGGACAGATCACTAACATCTTGGAGGAAAATGTTGTTCAGCCTCTGCTTGTGAGT 1636
Query 1560 ACCAGCGCGATCACTCTAGCAACTGAATGCGTAAGGATGATTTTGAAGATTGATGACATC 1619
||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1637 ACCAGTGCGATCACTTTAGCAACTGAATGCGTTAGGATGATTTTGAAGATTGATGACATC 1696
Query 1620 GTTACTGTGAGGTAGTGTGGTAGTTTCTTTCAAAA 1654
|| ||||||||||||||||||||||||||||||||
Sbjct 1697 GTAACTGTGAGGTAGTGTGGTAGTTTCTTTCAAAA 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81726487260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5