BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929695
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18215.1 | Symbols: | Protein of unknown function, DUF599 |... 1199 0.0
> AT3G18215.1 | Symbols: | Protein of unknown function, DUF599
| chr3:6240850-6242573 FORWARD LENGTH=1068
Length=1068
Score = 1199 bits (649), Expect = 0.0
Identities = 731/772 (95%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 4 TCTGCGGCGAAGTAGAGATGTGGAAGGAGGAATCTTTGGATTTAGTGCTTGTGCCGGCGG 63
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 102 TCTGCGGCGAAGTAGAAATGTGGACGGAGGAATCTTTGGATTTAGTGCTTGTGCCGACGG 161
Query 64 GTCTCGTCGTGATGGTAGCTTACCATGTCTGGCTCGTCTACGCTATCCTCCACCGTCCCA 123
|||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 162 GTCTGGTCGTGATGGTTGCTTACCATGTCTGGCTCGTCTACGCTATTCTTCACCGCCCCA 221
Query 124 AGCTCACTGTTATCTCTCTCAACGCTGAATCTCGACGACAATGGGTTTTCTCTATGATGA 183
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 222 AGCTCACTGTTATCGCTCTCAACGCTGAGTCTCGACGACAATGGGTCTTCTCTATGATGA 281
Query 184 CTGAGCCACTGAAAAATGGTACCTTGGCTGTTCAGACAATCCGGAACAACATAATGGCAT 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CTGAACCACTGAAAAATGGTACCTTGGCTGTTCAGACAATCCGGAACAACATAATGGCAT 341
Query 244 CTACACTTTTAGCCACAACAGCAATCACTCTATGTTCCATCATCGGCGTCTTTGTAAGCA 303
| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 342 CAACCCTTTTAGCCACAACAGCAATCACTTTATGTTCCATCATCGGCGTCTTTGTAAGCA 401
Query 304 ACTCGTCAGCTTCAAAATCCACCCCGACAAGTCTCATATACGGGAACAAAAGTCCTCGCT 363
|||||||| ||||||||||||| | |||| |||||||||||||| |||||| |||||||
Sbjct 402 ACTCGTCATCTTCAAAATCCACGGCAACAAATCTCATATACGGGAGCAAAAGCCCTCGCT 461
Query 364 TAGCATCAATCAAGAACTTTGCAATCCTGATCTGCTTCCTCATGGCCTTTCTCTGCAACA 423
|||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 462 TAGCGTCATTCAAGAACTTTGCAATCCTGATCTGTTTCCTCATGGCCTTTCTCTGCAACA 521
Query 424 TTCAGTCAATCAGGTACTACGCTCACGTAAGTTTCCTAGTCACTGTGCCTGTCTCGAGAG 483
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 522 TCCAGTCAATCAGGTATTACGCTCACGTAAGTTTCCTAGTCACAGTGCCTGTCTCAAGAG 581
Query 484 GGAAAAGAGAGCACTGCGAGTACGTTTCTAGAAACCTGAACCGAGCTAGCTACTTCTGGT 543
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 582 GGAAAAGAGAGCACTGCGAGTACGTGTCTAGAAACCTGAACCGAGCTAGCTACTTCTGGT 641
Query 544 CTCTCGGATTACGGGCTTTCTACTTCTCATTCCCGCTCTTCCTATGGACCTTCGGGCCAA 603
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 642 CTCTCGGATTACGGGCTTTCTACTTCTCCTTCCCTCTCTTCTTATGGACCTTCGGGCCAA 701
Query 604 TCCCGATGTTTGTGTGCTGTTGTATGATGTCCTCCATTCTATATTTCTTGGACACGACCA 663
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 702 TCCCGATGTTTGTGTGCTGTTGTATGATGTCCTCGATTCTATATTTCTTGGACACGACCA 761
Query 664 CTAGTTTCACCAGGCATCTCCATAGCCAGTCGTTCAGAGAAACGGCTGATTCAATGGACG 723
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 762 CTAGTTTTACCAGGCATCTTCATAGCCAATCGTTCAGAGAAACGGCTGATTCAATGGACG 821
Query 724 GTGAAATCGAATCAGCAGTTCATGCTCTGTAGATTCTTCTCTGATTTTTGTT 775
| |||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 822 GCGAAATCGAATCAGCTGTTCATACTCTGTAGATTCTTCTCTGACTTTTGTT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5